Job Description P39343 Confidence 99.98% Date Thu Jan 5 11:59:33 GMT 2012 Rank 35 Aligned Residues 268 % Identity 17% Template c2ioyB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Resolution 1.90 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		Y	T	L	G	I	L	I	P	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	K	Y	H	T	.	.	I	R	T	V	K	F	L	R	S	A
Query Conservation																																																																						.	.
Alig confidence																																																																						.	.
Template Conservation
Template Sequence		K	T	I	G	L	V	I	S	T	L	N	N	P	F	F	V	T	L	K	N	G	A	E	E	K	A	K	E	L	G	Y	K	I	I	V	E	D	S	Q	N	D	S	S	K	E	L	S	N	V	E	D	L	I	Q	Q	K	V	D	V	L	L	I	N	P	V	D	S	D	A	V	V	T	A	I	K	E	A	N	S	K
Template Known Secondary structure									S		S	S	S																		T									T	T															T	T		S							S	S	T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.																					.	.
Query SS confidence																					.																					.	.
Query Sequence		T	I	P	V	V	E	L	M	D	V	Q	G	E	R	L	D	M	E	V	.	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	R	V	.	.	R	H	K	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y	C	D	A	M	M	L	H	N	L	S	P	L	R	M	N	P
Query Conservation																					.																					.	.
Alig confidence																					.																					.	.
Template Conservation
Template Sequence		N	I	P	V	I	T	I	D	R	S	A	N	G	G	D	V	V	C	H	I	A	S	D	N	V	K	G	G	E	M	A	A	E	F	I	A	K	A	L	K	G	K	G	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R	G	K	G	F	D	E	A	I	A	K	Y	P	D	I	K	I	V	A	K	Q
Template Known Secondary structure		T							S	S			S	S	S			S																						T	T	T											T	T																T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	S	S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	H	G	L	E	I	G	R	Q	M	I	P	S	L	A	S	V	I	T	P	R	F	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	N	D	E	M	A	L	G	A	I	K	A	I	E	A	A	N	R	Q	G	I	I	V	V	G	F	D	G	T	E	D	A	L	K	A	I	K	E	G	K	M	A	A	T	I	A	Q	Q	P	A	L	M
Template Known Secondary structure				T	T																	S								S	S														T	T		T	T																			T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	M	A	A	Q	M	L	L	S	K	I	K	N	N	D	H	N	H	N	T	V	D	L	G	Y	Q	I	Y	H	G	N	T	L
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		G	S	L	G	V	E	M	A	D	K	Y	L	K	G	E	K	I	P	.	N	F	I	P	A	E	L	K	L	I	T	K	E	N	V
Template Known Secondary structure														T	T					.	S											T	T	T
Template Predicted Secondary structure																				.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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