Job Description P39343 Confidence 99.68% Date Thu Jan 5 11:59:33 GMT 2012 Rank 69 Aligned Residues 233 % Identity 10% Template c2hqbA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans Resolution 2.70 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		Y	T	L	G	I	L	I	P	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	K	Y	H	T	I	R	T	V	K	F	L	R	S	A	.	T
Query Conservation																																																																																.
Alig confidence										.	.																																																																					.
Template Conservation										.	.
Template Sequence		G	X	V	G	L	L	V	E	.	.	D	T	G	W	N	R	K	A	Y	E	G	L	L	N	I	H	S	N	L	D	V	D	V	V	L	E	E	G	V	N	S	E	Q	K	A	H	R	R	I	K	E	L	V	D	G	G	V	N	L	I	F	G	H	G	H	A	F	A	E	Y	F	S	T	I	H	N	Q	Y	P	D
Template Known Secondary structure										.	.					T														S												S														T	T								S	T								T	T	T	T	S		T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		0	.	.	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	V	V	E	L	M	D	V	Q	G	E	R	L	D	M	E	V	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	R	V	R	H	K	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y	C	D	A	M	M	L	H	N	L	S	P	L	R	M	N	P	R	A	I	S
Query Conservation
Alig confidence																																																					.	.	.
Template Conservation																																																					.	.	.
Template Sequence		V	H	F	V	S	F	N	G	E	V	K	G	E	N	I	T	S	L	H	F	E	G	Y	A	X	G	Y	F	G	G	X	V	A	A	S	X	S	E	T	H	K	V	G	V	I	A	A	F	P	W	Q	.	.	.	P	E	V	E	G	F	V	D	G	A	K	Y	X	N	E	S	E	A	F	V	R	Y	V	G	E	W
Template Known Secondary structure		S						S					S	S	S																						T		S	S	S							S		T	T		.	.	.													T	T										S	S	S
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	H	G	L	E	I	G	R	Q	M	I	P	S	L	A	S	V	I	T	P	R	F	D	I	G	R	M	A
Query Conservation
Alig confidence																		.																										.	.	.	.	.	.
Template Conservation																		.																										.	.	.	.	.	.
Template Sequence		T	D	A	D	K	A	L	E	L	F	Q	E	L	Q	K	E	.	Q	V	D	V	F	Y	P	A	G	D	G	Y	H	V	P	V	V	E	A	I	K	D	Q	G	D	.	.	.	.	.	.	F	A	I	G	Y	V	G	D	Q	A	D	L	G	G	S	T	I	L	T	S	T	V	Q	H	V	D	D	L	Y	V	L	V
Template Known Secondary structure		S														T	T	.	T									T	T	T												T		.	.	.	.	.	.							S			S	S	S	S		S	S
Template Predicted Secondary structure																		.																										.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		303	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	M	L	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	R	F	Q	E
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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