Job Description P39343 Confidence 99.97% Date Thu Jan 5 11:59:33 GMT 2012 Rank 44 Aligned Residues 249 % Identity 20% Template c2h0aA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus Resolution 2.80 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	I	L	I	P	S	F	Q	N	Q	L	F	A	D	I	L	A	G	I	E	S	V	T	S	E	H	N	Y	Q	T	L	I	A	N	Y	N	Y	D	R	D	S	E	E	E	S	V	I	N	L	L	S	Y	N	I	D	G	I	I	L	S	E	K	Y	H	T	I	R	T	V	K	F	L	R	S	A	T	I	P
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		T	V	S	V	L	L	P	F	V	A	T	E	F	Y	R	R	L	V	E	G	I	E	G	V	L	L	E	Q	R	Y	D	L	A	L	F	P	I	L	S	L	A	R	.	.	.	.	.	.	.	.	.	L	K	Y	L	T	D	G	L	I	L	A	S	Y	D	L	T	R	L	.	.	.	.	.	.	P	T	E	R	P
Template Known Secondary structure										S																	G	G	G	T										S				.	.	.	.	.	.	.	.	.						S						S							.	.	.	.	.	.	S		S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.
Predicted Secondary structure																																									.	.																																.
Query SS confidence																																									.	.																																.
Query Sequence		V	V	E	L	M	D	V	Q	G	E	R	L	D	M	E	V	G	F	D	N	R	Q	A	A	F	D	M	V	C	T	M	L	E	K	R	V	R	H	K	.	.	I	L	Y	L	G	S	K	D	D	T	R	D	E	Q	R	Y	Q	G	Y	C	D	A	M	M	L	H	N	L	S	P	L	.	R	M	N	P	R	A	I
Query Conservation																																									.	.																																.
Alig confidence											.	.																													.	.																																.
Template Conservation											.	.
Template Sequence		V	V	L	V	D	A	Q	N	P	.	.	R	Y	D	S	V	Y	L	D	N	R	L	G	G	R	L	A	G	A	Y	L	A	R	F	P	G	P	I	F	A	I	A	V	E	E	E	P	D	R	R	T	V	F	A	E	R	M	A	G	F	Q	E	A	L	K	E	A	G	R	P	F	S	P	D	R	L	Y	I	T	R
Template Known Secondary structure						S	S			T	.	.	T	S							S												T	T	S	S	S										S																					T	T					G	G	G
Template Predicted Secondary structure											.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	H	L	G	M	Q	L	M	R	D	A	L	S	A	N	P	D	L	D	G	V	F	C	T	N	D	D	I	A	M	G	A	L	L	L	C	R	E	R	N	L	A	V	P	E	Q	I	S	I	A	G	F	H	G	L	E	I	G	R	Q	M	I	P	S	L	A	S	V	I	T	P	R	F	D	I	G	R	M
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		H	S	Q	E	G	G	R	L	A	L	R	H	F	L	E	K	A	S	P	P	L	N	V	F	A	G	A	D	Q	V	A	L	G	V	L	E	E	A	V	R	L	G	L	T	P	G	R	D	V	R	V	L	G	F	D	G	H	P	F	A	E	E	.	.	A	G	L	S	T	I	A	Q	P	V	E	A	M	G	A	R
Template Known Secondary structure		S	S													T	T			S	S						S	S													T	T	S		T	T	T	T	S							S			T					.	.		T
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Q	M	L	L	S	K	I	K	N	N	D	H	N	H	N	T	V	D	L	G	Y	Q	I	Y	H	G	N	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	Q	L	L	L	E	R	M	R	G	Y	Q	G	P	P	R	E	V	R	F	E	P	V	L	V	E	R	A	S	T
Template Known Secondary structure											T	T			S	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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