Job Description P62556 Confidence 100.00% Date Thu Jan 5 12:07:37 GMT 2012 Rank 1 Aligned Residues 374 % Identity 20% Template c3ez6B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form Resolution 2.58 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																				.	.	.	.																																										.
Query SS confidence																																				.	.	.	.																																										.
Query Sequence		L	N	Q	C	I	N	A	G	H	E	M	T	K	A	I	A	I	A	Q	F	N	D	D	S	P	E	A	R	K	I	T	R	R	W	.	.	.	.	R	I	G	E	A	A	D	L	V	G	V	S	S	Q	A	I	R	D	A	E	K	A	G	R	L	P	H	P	D	M	E	I	R	G	R	V	E	Q	R	V	G	.
Query Conservation																																				.	.	.	.																																										.
Alig confidence																						.	.	.												.	.	.	.																																										.
Template Conservation																						.	.	.
Template Sequence		L	H	K	V	A	Q	R	A	N	R	M	L	N	V	L	T	E	Q	V	Q	.	.	.	L	Q	K	D	E	L	H	A	N	E	F	Y	Q	V	Y	A	K	A	A	L	A	K	L	P	L	L	T	R	A	N	V	D	Y	A	V	S	E	M	E	E	K	G	Y	V	F	D	K	R	P	A	G	S	S	M	K	Y	A
Template Known Secondary structure		T																			T	.	.	.	T	S						G	G	G	S	S					G	G	G	G	G	G	S	T	T																T	T						B	S		S	S	S		B
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		Y	T	I	E	Q	I	N	H	M	R	D	V	F	G	T	R	L	R	R	A	E	D	V	F	P	P	V	I	G	V	A	A	H	K	G	G	V	Y	K	T	S	V	S	V	H	L	A	Q	D	L	A	.	.	.	.	.	.	L	K	G	L	R	V	L	L	V	E	G	N	D	P	Q	G	T	A	S	M	Y	H	G
Query Conservation																																																					.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.												.
Template Conservation																																																																						.
Template Sequence		M	S	I	Q	N	I	I	D	I	Y	E	H	R	G	V	P	K	Y	R	D	R	Y	S	E	A	Y	V	I	F	I	S	N	L	K	G	G	V	S	K	T	V	S	T	V	S	L	A	H	A	M	R	A	H	P	H	L	L	M	E	D	L	R	I	L	V	I	D	L	.	D	P	Q	S	S	A	T	M	F	L	S
Template Known Secondary structure														T	T									S	S									S	S	S	S	S	S																T	T	T	G	G	G										.		T	T								S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																			.	.																																						.
Query SS confidence																			.	.																																						.
Query Sequence		W	V	P	D	L	H	I	H	A	E	D	T	L	L	P	F	Y	.	.	L	G	E	K	D	D	V	T	Y	A	I	K	P	T	C	W	P	G	L	D	I	I	P	S	C	L	A	L	H	R	I	E	T	E	L	M	G	.	K	F	D	E	G	K	L	P	T	D	P	H	L	M	L	R	L	A	I	E	T	V	A
Query Conservation																			.	.																																						.
Alig confidence																			.	.																																						.
Template Conservation
Template Sequence		H	K	H	S	I	G	I	V	N	A	T	S	A	Q	A	M	L	Q	N	V	S	R	E	E	L	L	E	E	F	I	V	P	S	V	V	P	G	V	D	V	M	P	A	S	I	D	D	A	F	I	A	S	D	W	R	E	L	C	N	E	H	L	P	G	Q	N	I	H	A	V	L	K	E	N	V	I	D	K	L	K
Template Known Secondary structure			T	T	T	T		S		S	S																			T					S	S	T	T								T	T							T									S	T	T	S		T	T	S						T					T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		H	D	Y	D	V	I	V	I	D	S	A	P	N	L	G	I	G	T	I	N	V	V	C	A	A	D	V	L	I	V	P	T	P	A	E	L	F	D	Y	T	S	A	L	Q	F	F	D	M	L	R	D	L	L	K	N	V	D	L	K	G	F	E	P	D	V	.	R	I	L	L	T	K	Y	S	N	S	N	G	S	Q
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		S	D	Y	D	F	I	L	V	D	S	G	P	H	L	D	A	F	L	K	N	A	L	A	S	A	N	I	L	F	T	P	L	P	P	A	T	V	D	F	H	S	S	L	K	Y	V	A	R	L	P	E	L	V	K	L	I	S	D	E	G	C	E	C	Q	L	A	T	N	I	G	F	M	S	K	L	S	N	K	A	D
Template Known Secondary structure		T	T		S								S			S											S								S	S												T	T											T	S																	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		S	P	W	M	E	E	Q	I	R	D	A	W	G	S	M	V	L	K	N	V	V	R	E	T	D	E	V	G	K	G	Q	I	R	M	R	T	V	F	E	Q	A	I	D	Q	.	R	S	S	T	G	A	W	R	N	A	L	S	I	W	E	P	V	C	N	E	I	F	D	R	L	I	K	P	R	W
Query Conservation																																														.
Alig confidence																																														.																										.
Template Conservation																																																																								.
Template Sequence		H	K	Y	C	H	S	L	A	K	E	V	F	G	G	D	M	L	D	V	F	L	P	R	L	D	G	F	E	R	C	G	E	S	F	D	T	V	I	S	A	N	P	A	T	Y	V	G	S	A	D	A	L	K	N	A	R	I	A	A	E	D	F	A	K	A	V	F	D	R	I	.	E	F	I	R
Template Known Secondary structure														G	G	G	B		S	S														T	T			T	T	T	S		T	T	T		S	S																								.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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