Job Description P62556 Confidence 78.47% Date Thu Jan 5 12:07:37 GMT 2012 Rank 495 Aligned Residues 144 % Identity 13% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.							.	.
Predicted Secondary structure																																																				.	.	.																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.																				.	.	.	.	.	.
Query Sequence		V	F	P	P	V	I	G	V	A	A	H	K	G	G	V	Y	K	T	S	V	S	V	H	L	A	Q	D	L	A	L	K	G	L	R	V	L	L	V	E	G	N	D	P	Q	G	T	A	S	M	Y	.	.	.	H	G	W	V	P	D	L	H	I	H	A	E	D	T	L	L	P	F	Y	.	.	.	.	.	.	L	G
Query Conservation																																																				.	.	.																				.	.	.	.	.	.
Alig confidence												.																																								.	.	.																				.	.	.	.	.	.
Template Conservation												.
Template Sequence		P	A	G	K	T	V	A	L	V	G	.	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S	L	R	N	Q	V	A	L	V	S	Q	N	V	H	L	F	N	D	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y
Template Known Secondary structure			T	T							S	.	S	T	T	S	S								T	T	T		S			B	S	S					S	S	S	B	T	T	T	S							T	T						S						S	S		B	S	T	T	T	T	S	S	S	S	T	T	S
Template Predicted Secondary structure												.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		E	K	D	D	V	T	Y	A	I	K	P	T	C	W	P	G	L	D	I	I	P	S	C	L	A	L	H	R	I	E	T	E	L	M	G	K	F	D	E	G	K	L	P	T	D	P	H	L	M	L	R	L	A	I	E	T	V	A	H	D	Y	D	V	I	V	I	D	S	A	P	N	L	G	I	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	E	Q	I	E	E	A	A	R	M	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L	L	S	G	G	Q	R	Q	R	I
Template Known Secondary structure				T	T					T	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					T	T	S	S	S	S	S	B					T	T	S		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.																																					.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
			249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	T	I	N	V	V	C	A	A	D	V	L	I	V	P	T	P	A	E	L	F	D	Y	T	S	A	L	Q	F	F	D	M	L	R	D	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L
Template Known Secondary structure			T					T	S			S							T	T	S	S									T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions