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Job DescriptionP62556
Confidence99.41%DateThu Jan 5 12:07:37 GMT 2012
Rank44Aligned Residues163
% Identity20%Templatec2j37W_
PDB info PDB header:ribosomeChain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
Resolution8.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  INHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAED
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Template Sequence  FKELVKLVDPGVKAWTPTKGNVIMFVGLQ. GSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL. . . . . . . . . . . .
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   80.........90.........100........ .110.........120.........130.........140......
 
   167..170.........180.........190.........200.........210.........220.........230.. .......240.....
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Query Sequence  TLLPFYLGEKDDVTYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA. HDYDVIVIDSAPN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR
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   149150.........160.........170.........180.........190....
 
   246. ..250.........260........ .270.........280.........290.........300.........
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Query Sequence  LG. . . . . . . . IGTINVVCAADVLIVPTPAEL. . FDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNG
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Template Sequence  HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV. . . . . . . . . . . . . DVASVIVTKLDGHAK
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   195....200.........210.........220.........230.........240 .........250.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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