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Job DescriptionP62556
Confidence99.14%DateThu Jan 5 12:07:37 GMT 2012
Rank52Aligned Residues152
% Identity27%Templatec2j289_
PDB info PDB header:ribosomeChain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
Resolution8.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.... .....140.........150.........160.........170......
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Query Sequence  LRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALK. GLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEK
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Template Sequence  TLNLAAQPPAVVLMAGLQ. GAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL. . . . . . . . . . . . . . . . . . . . . .
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   92.......100......... 110.........120.........130.........140........
 
   177..180.........190.........200.........210.........220.........230.. .......240.......
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Query Sequence  DDVTYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA. HDYDVIVIDSAPNLG. . . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . ETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDE
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   149150.........160.........170.........180.........190.........200....
 
   248.250.........260........ .270.........280.........290.........300.........
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Query Sequence  IGTINVVCAADVLIVPTPAEL. . FDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNG
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Template Sequence  IKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL. . . . . . . . . . . . . PLTGVVLTKVDGDAR
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STTTGGGGTT
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   205....210.........220.........230.........240 .........250.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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