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Job DescriptionP62556
Confidence99.46%DateThu Jan 5 12:07:37 GMT 2012
Rank42Aligned Residues163
% Identity25%Templatec2iy3A_
PDB info PDB header:rna-bindingChain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
Resolution16.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  INHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAED
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Template Sequence  YEALKEALGGEARLPVLKDRNLWFLVG. LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQL. . . . . . . . . . . .
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   7980.........90.........100..... ....110.........120.........130.........140.....
 
   167..170.........180.........190.........200.........210.........220.........230. ........240.....
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Query Sequence  TLLPFYLGEKDDVTYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETV. AHDYDVIVIDSAPN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR
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   146...150.........160.........170.........180.........190.
 
   246. ..250.........260........ .270.........280.........290.........300.........
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Query Sequence  LG. . . . . . . . IGTINVVCAADVLIVPTPAEL. . FDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNG
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Template Sequence  LQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV. . . . . . . . . . . . . GVTGLVLTKLDGDAR
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   192.......200.........210.........220.........230....... ..240.........250..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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