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Job DescriptionP62556
Confidence95.68%DateThu Jan 5 12:07:37 GMT 2012
Rank144Aligned Residues146
% Identity16%Templatec1d2eA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDVTYAIK
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Template Sequence  KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAK. . . . . . FKKYEEIDNAPEERARGITINAAHVEYSTAA. . . . . . . . .
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SSTTSSTTSB
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   55....60.........70.........80........ .90.........100.........110.........
 
   185....190.........200.........210.........220.........230.........240....... ..250.........260..
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Query Sequence  PTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLG. . IGTINVVCAADVLIV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RHYAHTDCPGHADYVKNMITGTAPLDGCIL
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   120.........130.........140.........
 
   263......270.........280.........290.........300.........310. ........320...
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Query Sequence  PTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQ. SPWMEEQIRDAW
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Template Sequence  VVAANDGPMPQTREHLLLA. . . . . . . . RQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL
Template Known Secondary structure  TTT
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GGG
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   150.........160........ .170.........180.........190.........200...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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