Job Description P76168 Confidence 100.00% Date Thu Jan 5 12:20:01 GMT 2012 Rank 4 Aligned Residues 296 % Identity 15% Template c2a3vA_ PDB info PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		K	E	L	A	E	K	F	L	A	L	.	K	E	T	E	V	A	K	T	S	L	N	T	Y	R	A	V	I	K	N	I	L	S	I	I	G	E	K	N	L	A	S	S	I	N	K	E	K	L	L	E	V	R	K	E	L	L	T	G	Y	Q	I	P	K	S	N	Y	I	V	T	Q	P	G	R	S	A	V	T	V	N
Query Conservation												.
Alig confidence												.																									.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	F	L	L	S	V	R	E	F	M	Q	T	R	Y	Y	A	K	K	T	I	E	A	Y	L	H	W	I	T	R	Y	I	H	F	H	.	N	K	K	H	P	S	L	M	G	D	K	E	V	E	E	F	L	T	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	A	V	Q	G	K	V	A	T	K	T	Q	S
Template Known Secondary structure															T	T																		T	T	S	.	S	S			G	G	G														.	.	.	.	.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																					.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.													.	.	60	.	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	M	T	N	L	N	A	V	F	Q	F	G	V	D	N	G	Y	L	A	D	N	P	F	K	G	I	S	P	L	K	E	S	R	T	I	P	D	P	L	S	R	E	E	F	I	R	L	I	D	A	C	R	N	Q	Q	A	K	N	L	W	C	V	S	V	Y	T	G	V	R	P	G	E	L	C	A	L	G	W	E
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		L	A	L	N	S	L	S	F	L	Y	K	E	I	L	K	T	P	L	S	L	E	I	R	F	Q	R	S	Q	L	E	R	K	L	P	V	.	.	.	.	V	L	T	R	D	E	I	R	R	L	L	E	I	V	D	P	K	H	Q	L	P	I	K	L	L	Y	G	S	G	L	R	L	M	E	C	M	R	L	R	V	Q
Template Known Secondary structure														T	S	S					T	T															.	.	.	.											T	T	S	S														S									T		B	G	G
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		D	I	D	L	K	N	G	T	M	M	I	R	R	N	L	A	K	D	R	F	T	V	P	K	T	Q	A	G	T	N	R	V	I	H	L	I	K	P	A	I	D	A	L	R	S	Q	M	T	L	T	R	L	S	K	E	H	I	I	D	V	H	F	R	E	Y	G	R	T	E	K	Q	K	C	.	.	.	.	.	T	F
Query Conservation																																																																											.	.	.	.	.
Alig confidence																																																																											.	.	.	.	.
Template Conservation
Template Sequence		D	I	D	F	D	Y	G	A	I	R	I	W	Q	G	K	G	G	K	N	R	T	V	T	L	A	K	E	L	Y	P	H	L	K	E	Q	I	A	L	A	K	R	Y	Y	D	R	D	L	H	Q	K	N	Y	G	G	V	W	L	P	T	A	L	K	E	K	Y	P	N	A	P	Y	E	F	R	W	H	Y	L	F	P	S
Template Known Secondary structure		G			T	T	T	T								T	T	T									G	G	G																			T	S		T	T	B			S			S	T	T		T	T	T	S	T	T	G	G	G		G	G	G	S	B	S	S	B
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		V	F	Q	P	E	V	S	A	R	V	K	N	Y	G	D	H	F	T	V	D	S	I	R	Q	M	W	D	A	A	I	K	R	A	G	L	R	.	H	R	K	S	Y	Q	S	R	H	T	Y	A	C	W	S	L	T	A	G	A	N	P	A	F	I	A	N	Q	M	G	H	A	D	A	Q	M	V	F	Q	V	Y	G	K
Query Conservation																																						.
Alig confidence																																						.																																							.
Template Conservation																																																																													.
Template Sequence		F	Q	L	S	L	D	P	E	S	D	V	M	R	R	H	H	M	N	E	T	V	L	Q	K	A	V	R	R	S	A	Q	E	A	G	I	E	K	T	V	T	C	H	T	L	R	H	S	F	A	T	H	L	L	E	V	G	A	D	I	R	T	V	Q	E	Q	L	G	H	T	D	V	K	T	T	Q	.	I	Y	T	H
Template Known Secondary structure		S	S					T	T	T	T						B																T	T				S																		T	T											T		S	S					G	.	G	G
Template Predicted Secondary structure																																																																													.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.
		354
Predicted Secondary structure
Query SS confidence
Query Sequence		W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions