Job Description P76168 Confidence 100.00% Date Thu Jan 5 12:20:01 GMT 2012 Rank 2 Aligned Residues 274 % Identity 16% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		L	E	K	F	G	E	A	R	Q	D	L	T	I	K	E	L	A	E	K	F	L	A	L	.	K	E	T	E	V	A	K	T	S	L	N	T	Y	R	A	V	I	K	N	I	L	S	I	I	G	E	K	N	L	A	S	S	I	N	K	E	K	L	L	E	V	R	K	E	L	L	T	G	Y	Q	I	P	K	S	N	Y
Query Conservation																									.
Alig confidence																									.																									.																									.	.	.	.	.	.	.
Template Conservation																																																		.																									.	.	.	.	.	.	.
Template Sequence		L	T	A	R	I	N	S	D	N	S	V	T	L	H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	A	I	R	R	G	L	.	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	.	.	.	.	.	.	.
Template Known Secondary structure											S		B														T	T	T																				S	.		S		B	G	G	G																T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.																									.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		I	V	T	Q	P	G	R	S	A	V	T	V	N	N	Y	M	T	N	L	N	A	V	F	Q	F	G	V	D	N	G	Y	L	A	D	N	P	F	K	G	I	S	P	L	K	E	S	R	T	I	P	D	P	L	S	R	E	E	F	I	R	L	I	D	A	C	R	N	Q	Q	A	.	K	N	L	W	C	V	S	V	Y
Query Conservation																																																																								.
Alig confidence		.	.	.	.	.	.	.																																																																.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A	I	A	E	G	H	I	T	T	N	H	V	A	A	T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V
Template Known Secondary structure		.	.	.	.	.	.	.																						T	T	S		S	S		T	T	T	T	S									B															T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	R	P	G	E	L	C	A	L	G	W	E	D	I	D	L	K	N	G	T	M	M	I	R	R	N	L	A	K	D	R	F	T	V	P	K	T	Q	A	G	T	N	R	V	I	H	L	I	K	P	A	I	D	A	L	R	S	Q	M	T	L	T	R	L	S	K	E	H	I	I	D	V	H	F	R	E	Y	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L	Y	V	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T		B	G	G	G			T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T								T	T				T	T	T	T														.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.														.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		R	T	E	K	Q	K	C	T	F	V	F	Q	P	E	V	S	A	R	V	K	N	Y	G	D	H	F	T	V	D	S	I	R	Q	M	W	D	A	A	I	K	R	A	G	L	R	.	.	.	.	H	R	K	S	Y	Q	S	R	H	T	Y	A	C	W	S	L	T	A	G	A	N	P	A	F	I	A	N	Q	M	G	H
Query Conservation																																															.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E	L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T		S	S	B	S	S			T	T	S																				T				S	S	B				T	T					.										T										T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																.
Template SS confidence
													266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		342	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	Q	M	V	F	Q	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	D	T	M	A	S	Q	R	D
Template Known Secondary structure		S	S					T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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