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Job DescriptionP76168
Confidence100.00%DateThu Jan 5 12:20:01 GMT 2012
Rank2Aligned Residues274
% Identity16%Templatec1z1bA_
PDB info PDB header:dna binding protein/dnaChain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50 .........60.........70.........80.........90.........100......
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Query Sequence  LEKFGEARQDLTIKELAEKFLAL. KETEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLTGYQIPKSNY
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Template Sequence  LTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGL. PDAPLEDITTKEIAAMLNGYIDEG. . . . . . .
Template Known Secondary structure  S
BTTT

S.
S
BGGG

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   64.....70.........80.........90.........100.........110. ........120.........130.....
 
   107..110.........120.........130.........140.........150.........160.........170...... ...180.....
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Query Sequence  IVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPDPLSREEFIRLIDACRNQQA. KNLWCVSVY
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Template Sequence  . . . . . . . KAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVV
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TTS
SS
TTTTS







B



TTSS
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   136...140.........150.........160.........170.........180.........190.........200........
 
   186...190.........200.........210.........220.........230.........240.........250.........260.....
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Query Sequence  TGVRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHFREYG
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Template Sequence  TGQRVGDLCEMKWSDIVDGYLYVEQ. . . . . . . . . . . . . SKTGVKIAIPTALHIDALGISMKETLDKCKEI. . . . . . . . . .
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TT
BGGGTT
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TT
TTTT..........
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   209210.........220.........230... ......240.........250.........260.....
 
   266...270.........280.........290.........300.........310 .........320.........330.........340.
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Query Sequence  RTEKQKCTFVFQPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLR. . . . HRKSYQSRHTYACWSLTAGANPAFIANQMGH
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Template Sequence  . . . . . . . . . . . LGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRS. LSARLYEKQISDKFAQHLLGH
Template Known Secondary structure  ...........T
SSBSS

TTS



T


SSB


TT.T
T
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   266...270.........280.........290.........300.........310.. .......320.........330...
 
   342.......350.
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Query Sequence  ADAQMVFQVY
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Template Sequence  KSDTMASQRD
Template Known Secondary structure  SST


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   334.....340...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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