Job Description P76168 Confidence 100.00% Date Thu Jan 5 12:20:01 GMT 2012 Rank 1 Aligned Residues 296 % Identity 13% Template c1ma7A_ PDB info PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Resolution 2.30 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																		.	.																						.
Query SS confidence																		.	.																						.
Query Sequence		T	I	K	E	L	A	E	K	F	L	A	L	K	E	T	E	.	.	V	A	K	T	S	L	N	T	Y	R	A	V	I	K	N	I	L	S	I	I	G	.	E	K	N	L	A	S	S	I	N	K	E	K	L	L	E	V	R	K	E	L	L	T	G	Y	Q	I	P	K	S	N	Y	I	V	T	Q	P	G	R	S	A
Query Conservation																		.	.																						.
Alig confidence																		.	.																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	D	E	V	R	K	N	L	M	D	M	F	R	D	R	Q	A	F	S	E	H	T	W	K	M	L	L	S	V	C	R	S	W	A	A	W	C	K	L	N	N	R	K	W	F	P	A	E	P	E	D	V	R	D	Y	L	L	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	R	G	L	A	V
Template Known Secondary structure																T	G	G	G	S																						T	T				S	S														.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.														.	80	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		V	T	V	N	N	Y	M	T	N	L	N	A	V	F	Q	F	G	V	D	N	G	Y	L	A	D	N	P	F	K	G	I	.	.	.	.	.	.	.	.	S	P	L	K	E	S	R	T	I	P	D	P	L	S	R	E	E	F	I	R	L	I	D	A	C	R	N	Q	Q	A	.	.	.	.	.	.	K	N	L	W	C
Query Conservation																																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	I	Q	Q	H	L	G	Q	L	N	M	L	H	R	R	S	G	L	P	R	P	S	D	S	N	A	V	S	L	V	M	R	R	I	R	K	E	N	V	D	A	G	E	R	A	K	Q	A	L	A	F	E	R	T	D	F	D	Q	V	R	S	L	M	E	N	S	D	R	C	Q	D	I	R	N	L	A	F	L	G
Template Known Secondary structure																	T	T	T	S			G	G	G	S																T	T	T																						T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	V	Y	T	G	V	R	P	G	E	L	C	A	L	G	W	E	D	I	D	L	K	N	G	T	M	M	I	R	R	N	L	A	K	D	R	F	T	V	P	K	T	Q	A	G	T	N	R	V	I	H	L	I	K	P	A	I	D	A	L	R	S	Q	M	T	L	T	R	L	S	K	E	H	I	I	D	V	H	F
Query Conservation
Alig confidence																																				.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		I	A	Y	N	T	L	L	R	I	A	E	I	A	R	I	R	V	K	D	I	S	R	T	D	G	G	R	M	L	I	H	I	G	R	.	.	.	.	.	T	K	T	L	V	S	T	A	G	V	E	K	A	L	S	L	G	V	T	K	L	V	E	R	W	I	S	V	S	G	V	A	D	D	P	N	N	Y	L	F	C
Template Known Secondary structure										S					S		B	S	S	S			S	T	T	T	T	S								.	.	.	.	.			S	S	S	S		S								T	T															S	S	S	T	T	S	B	S
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.										310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.
Query Sequence		R	E	Y	G	R	T	E	K	Q	K	C	T	F	V	F	Q	P	E	V	S	A	R	V	K	N	Y	G	D	H	F	T	V	D	S	I	R	Q	M	W	D	A	A	I	K	R	A	G	L	.	.	.	.	.	.	.	.	.	R	H	R	K	S	Y	Q	S	R	H	T	Y	A	C	W	S	L	T	A	G	A	N	P
Query Conservation																																																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	R	K	N	G	V	A	A	P	S	A	T	S	Q	L	S	T	R	A	L	E	G	I	F	E	A	T	H	R	L	I	Y	G	A	K	D	D	S	G	Q	R	Y	L	A	W	S	G	H	S	A	R	V	G	A	A	R	D	M	A	R	A	G	V	S	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		B		T	T	S		B				S	S																				T		S				S	S		S		S	S			T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	I	A	N	Q	M	G	H	A	D	A	Q	M	V	F	Q	V	Y	G	K	W	M	S	E	N	N	N	A	Q	V	A	L	L	N
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		P	E	I	M	Q	A	G	G	W	T	N	V	N	I	V	M	N	.	Y	I	R	N	L	D	S	E	T	G	A	M	V	R	L	L	E
Template Known Secondary structure									T		S		S						.			T	T		G	G	G									T
Template Predicted Secondary structure																			.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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