Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEM0
Confidence100.00%DateThu Jan 5 11:23:40 GMT 2012
Rank3Aligned Residues146
% Identity24%Templatec2kr7A_
PDB info PDB header:isomeraseChain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 









































Query SS confidence 















































































Query Sequence  SESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQY
Query Conservation     
  

 
 
 
     

 
 


     
     
    
 


  
 

  

     


  


  
   
  
Alig confidence 















































































Template Conservation      
    
 
 
     

  
  
     
     
 
  
 


 

 

  

   
 


  



    

  
Template Sequence  HDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYLQE
Template Known Secondary structure 


TTS

SS
S
STTT

TT


S
TT

BT

GGGTT
SS
S
Template Predicted Secondary structure 
































Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   82.......90.........100.........110.........120.........130.........140........
Predicted Secondary structure 
































Query SS confidence 


































































Query Sequence  FSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALE
Query Conservation       
        
         
      
  
    
 

 






 
 
 



 
  


Alig confidence 






.


























































Template Conservation 

   
 .      
  
      
      
  
    
 

 






 
 
 


  

 

 
Template Sequence  VPRDQFE. GIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFREVSE
Template Known Secondary structure  GGGGT.TS


TT
TTT
SS

TTS





S
Template Predicted Secondary structure 


.



























Template SS confidence 


































































   84.....90 .........100.........110.........120.........130.........140.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions