Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEM0
Confidence100.00%DateThu Jan 5 11:23:40 GMT 2012
Rank2Aligned Residues144
% Identity31%Templatec2k8iA_
PDB info PDB header:isomeraseChain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQ
Query Conservation 
   
  

 
 
 
     

 
 


     
     
    
 


  
 

  

     


  


  
   
 
Alig confidence 

..



























.














































Template Conservation 

..
     
 
 
     

 
 


    .
  
  
 
 





 

 

  

   
 


  



 
   
 
Template Sequence  MK. . VAKDLVVSLAYQVRTEDGVLVDESPVSA. PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQ
Template Known Secondary structure 

..

TTTTS


SSS.
TTS
SS
STT

TT
TTTSS



TTS
Template Predicted Secondary structure 

..














.


















Template SS confidence 















































































   1. .......10.........20.........30 .........40.........50.........60.........70.......
 
   81........90.........100.........110.........120.........130.........140........
Predicted Secondary structure 
































Query SS confidence 



































































Query Sequence  YFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALE
Query Conservation        
        
         
      
  
    
 

 






 
 
 



 
  


Alig confidence 

























.








































Template Conservation   

   

    
  
         
.     
  
    



 






 
 
 
 
  

 

 
Template Sequence  RVPKDVFMGVDELQVGMRFLAETDQG. PVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATE
Template Known Secondary structure  GGGGTTSS


TT
TT.
SSS

SS




S
Template Predicted Secondary structure 
















.














Template SS confidence 



































































   78.80.........90.........100... ......110.........120.........130.........140....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions