Job Description P0AAG3 Confidence 100.00% Date Thu Jan 5 11:12:51 GMT 2012 Rank 24 Aligned Residues 221 % Identity 31% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		2	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		I	T	L	K	N	V	S	K	W	Y	.	.	.	G	H	F	Q	V	L	T	D	C	S	T	E	V	K	K	G	E	V	V	V	V	C	G	P	S	G	S	G	K	S	T	L	I	K	T	V	N	G	L	E	P	V	Q	Q	G	E	I	T	V	D	G	I	V	V	N	D	K	K	T	D	L	A	K	L	R	S	R
Query Conservation												.	.	.
Alig confidence												.	.	.																																																								.	.
Template Conservation																																																																						.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	.	.	Q	L	N	V	Q	W	L	R	A	Q
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	.	.	S	S						T	T	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.			.	1100	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	M	V	F	Q	H	F	E	L	F	P	H	L	S	I	I	E	N	L	T	L	A	Q	V	K	V	L	K	R	D	K	A	P	A	R	E	K	A	L	K	L	L	E	R	V	G	L	S	A	H	A	N	K	F	P	A	.	.	.	.	.	.	.	.	.	.	.	Q	L	S	G	G	Q	Q	Q	R	V	A	I
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.										.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.										.	.	.	.	.
Template Sequence		L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	.	.	.	.	.	D	N	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I
Template Known Secondary structure							S	S					S	S	.	B						T			.	.	.	.	.		S	S																T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure															.										.	.	.	.	.
Template SS confidence
		1109	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130						.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	L	C	M	D	P	I	A	M	L	F	D	E	P	T	S	A	L	D	P	E	M	I	N	E	V	L	D	V	M	V	E	L	A	N	E	G	M	T	M	M	V	V	T	H	E	M	G	F	A	R	K	V	A	N	R	V	I	F	M	D	E	G	K	I	V	E	D	S	P	K	D	A	F	F	D	D	P
Query Conservation
Alig confidence																																						.																	.																										.
Template Conservation																																						.																	.																										.
Template Sequence		A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	.	E	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	.	N	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T	H	Q	Q	L	L	A	Q	.
Template Known Secondary structure										S	S					S		S	S	S																	S	.	S	S	S							S		T	T	G	G	G	.	S		S							T	B														S	.
Template Predicted Secondary structure																																						.																	.																										.
Template SS confidence
		1183	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.		.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.		.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	D	R	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	I	Y	F	S
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		1260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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