Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAG3
Confidence96.63%DateThu Jan 5 11:12:51 GMT 2012
Rank177Aligned Residues128
% Identity16%Templatec3b9qA_
PDB info PDB header:protein transportChain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.........70.........80.........90........
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  DCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENL
Query Conservation   


 
  


  
 
 








  
 
      
 
   
                
  
 
   
    

 
 
Alig confidence 
















































...............................
Template Conservation            

  

  
 




 



      
  
 

  

 
...............................
Template Sequence  ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S



SSS


TTS
TT





S
...............................
Template Predicted Secondary structure 























...............................
Template SS confidence 















































































   156...160.........170.........180.........190.........200....
 
   99100.........110.........120.........130.........140.........150.........160.... .....170.......
Predicted Secondary structure 






















.



Query SS confidence 

































































.












Query Sequence  TLAQVKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPT. SALDPEMINEVLD
Query Conservation                        
    
          

 
   

 

 

   
 







. 


      
  
Alig confidence  ............



















...






























.












Template Conservation  ............ 

 


   
   

    ...                      
 







         

  
Template Sequence  . . . . . . . . . . . . AAASDQLEIWAERTGCEIVV. . . AEKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIA
Template Known Secondary structure  ............T

...




TT
S




SS

Template Predicted Secondary structure  ............

...

















Template SS confidence 















































































   205....210.........220.... .....230.........240.........250.........260.........
 
   178.180... ......190..
Predicted Secondary structure  ....


Query SS confidence 





. . . .








Query Sequence  VMVELA. . . . NEGMTMMVV
Query Conservation   
  
 ....    


  
Alig confidence 





....








Template Conservation              
    

Template Sequence  CKKAVGKIVSGAPNEILLV
Template Known Secondary structure  TTSTT

S
Template Predicted Secondary structure 






Template SS confidence 


















   272.......280.........290
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions