Job Description P0AAG3 Confidence 98.64% Date Thu Jan 5 11:12:51 GMT 2012 Rank 86 Aligned Residues 118 % Identity 23% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.
Query Sequence		G	H	F	Q	V	L	T	D	C	S	T	E	V	K	K	G	E	V	V	V	V	C	G	P	S	G	S	G	K	S	T	L	I	K	T	V	N	G	L	.	.	.	.	.	.	.	.	.	E	P	V	Q	Q	G	E	I	T	V	D	G	I	V	V	N	D	K	K	T	D	L	A	K	L	R	S	R	V	G	M	V
Query Conservation																																									.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		E	I	A	F	I	P	N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A	E	V	S	I	V	D	C	.	.	.	.	.	.	.	.	.	.	.	I	L	A	R	V	G	.	.
Template Known Secondary structure		T												T	T	S	S								S	T	T	S	S																	T	T			B	S	S	S								S		.	.	.	.	.	.	.	.	.	.	.							.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.												.	.	710	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		F	Q	H	F	E	L	F	P	H	L	S	I	I	E	N	L	T	L	A	Q	V	K	V	L	K	R	D	K	A	P	A	R	E	K	A	L	K	L	L	E	R	V	G	L	S	A	H	A	N	K	F	P	A	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	C	.	.	M	D	P	I	A	M	L	F
Query Conservation																																																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T	K	D	S	L	I	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T			T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																									723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																	.											.
Query SS confidence																	.											.
Query Sequence		D	E	P	T	S	A	L	D	P	E	M	I	N	E	V	.	L	D	V	M	V	E	L	A	N	E	.	G	M	T	M	M	V	V	T	H	E	M	G
Query Conservation																	.											.
Alig confidence																	.											.
Template Conservation
Template Sequence		D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E
Template Known Secondary structure			S				S	S																			T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions