Job Description P0AAG3 Confidence 100.00% Date Thu Jan 5 11:12:51 GMT 2012 Rank 16 Aligned Residues 223 % Identity 32% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	L	K	N	V	S	K	W	Y	G	H	F	Q	V	L	T	D	C	S	T	E	V	K	K	G	E	V	V	V	V	C	G	P	S	G	S	G	K	S	T	L	I	K	T	V	N	G	L	E	P	V	Q	Q	G	E	I	T	V	D	G	I	V	V	N	D	K	K	T	D	L	A	K	L	R	S	R	V	G	M
Query Conservation
Alig confidence																																																																								.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	.	.	.	.	D	R	N	I	S	M
Template Known Secondary structure												T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	.	.	.	.	G	T	T
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	Q	H	F	E	L	F	P	H	L	S	I	I	E	N	L	T	L	A	Q	V	K	V	L	K	R	D	K	A	P	A	R	E	K	A	L	K	L	L	E	R	V	G	L	S	A	H	A	N	K	F	P	A	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	C	M	D	P	I	A	M	L	F	D
Query Conservation
Alig confidence						.	.	.	.	.	.													.	.	.
Template Conservation						.	.	.	.	.	.													.	.	.
Template Sequence		V	F	Q	H	.	.	.	.	.	.	M	T	V	Y	E	N	I	A	F	P	L	K	.	.	.	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M	D
Template Known Secondary structure						.	.	.	.	.	.									T	T			.	.	.																		T	T		G	G	G	T	T			G	G	G			S	S												T	T			S
Template Predicted Secondary structure						.	.	.	.	.	.													.	.	.
Template SS confidence
		89	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		E	P	T	S	A	L	D	P	E	M	I	N	E	V	L	D	V	M	V	E	L	.	A	N	E	G	M	T	M	M	V	V	T	H	E	M	G	F	A	R	K	V	A	N	R	V	I	F	M	D	E	G	K	I	V	E	D	S	P	K	D	A	F	F	D	D	P	K	S	D	R	A	K	D	F	L	A
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I	G
Template Known Secondary structure		S	T	T	T	T	S																												S										S							T	T														S		S	B							S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions