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Job DescriptionP0AAG3
Confidence97.55%DateThu Jan 5 11:12:51 GMT 2012
Rank110Aligned Residues152
% Identity14%Templatec1szpC_
PDB info PDB header:dna binding proteinChain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament
Resolution3.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40........ .50.........60.........70.........80.........90.......
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Query Sequence  VKKGEVVVVCGPSGSGKSTLIKTVN. . . . . . GLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIEN
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Template Sequence  VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFG. . . . . . . . . LDPDDALN
Template Known Secondary structure  SSSSTTSSTTS
TTTT

SSSSS


GGGGT
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GG
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   175....180.........190.........200.........210.........220.........230....... ..240.....
 
   98.100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  LTLAQVKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMI. . . . .
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Template Sequence  NVAYARAYNADHQLRLLDAAAQMMSE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . SRFSLIVVDSVMALYRELSARQMHL
Template Known Secondary structure  G

STTT.............................S

TTGGG

T
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   246...250.........260.........270. ........280.........290......
 
   173......180..... ....190.... .....200.........210...
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Query Sequence  NEVLDVMVELANE. GMTMMVVTH. EMGFARKVANRVIFMDEGK
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Template Sequence  AKFMRALQRLADQFGVAVVVTNQVGGNIMAHSSTTRLGFKKGK
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   304.....310.........320.........330.........340......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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