Job Description P77559 Confidence 100.00% Date Thu Jan 5 12:30:33 GMT 2012 Rank 5 Aligned Residues 286 % Identity 20% Template c3t1bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	L	R	H	L	R	Y	F	V	A	V	A	E	E	L	H	F	G	R	A	A	A	R	L	N	I	S	Q	P	P	L	S	Q	Q	I	Q	A	L	E	Q	Q	I	G	A	R	L	L	A	R	T	N	R	S	V	L	L	T	A	A	G	K	Q	F	L	A	D	S	R	Q	I	L	S	M	V	D	D	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	L	D	D	L	N	L	F	R	L	V	V	E	N	G	S	Y	T	S	T	S	K	K	T	M	I	P	V	A	T	I	T	R	R	I	Q	A	L	E	D	S	L	N	L	R	L	L	N	R	H	A	R	K	L	T	L	T	E	A	G	E	R	F	Y	K	D	C	S	P	L	L	E	R	L	A	S	M	T	E
Template Known Secondary structure																	S	S																											T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	E	R	L	H	Q	G	E	A	G	E	L	R	I	G	F	T	S	S	A	P	F	I	R	A	V	S	D	T	L	S	L	F	R	R	D	Y	P	D	V	H	L	Q	T	R	E	M	N	T	R	E	Q	I	A	P	L	I	E	G	T	L	D	M	G	L	L	R	N	T	A	L	P	E	S	L	E	H	A	V
Query Conservation
Alig confidence																					.																															.	.	.	.
Template Conservation																					.																															.	.	.	.
Template Sequence		E	I	T	D	E	C	R	G	A	S	G	R	I	R	I	S	A	P	S	.	E	L	T	K	R	M	M	M	P	M	F	N	A	F	M	E	K	Y	P	D	I	H	I	E	L	M	M	S	N	Q	.	.	.	.	A	D	L	D	P	T	E	W	D	V	I	F	R	V	G	P	Q	R	D	S	S	L	I	A	R	K
Template Known Secondary structure							S			S										T	.	T	T	T	T	T	T													T	T									S	S	.	.	.	.					S	T	T		S						S							S
Template Predicted Secondary structure																					.																															.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	H	E	P	L	M	A	M	I	P	H	D	H	P	L	A	N	N	P	N	V	T	L	A	E	L	A	K	E	P	F	V	F	F	D	P	H	V	G	T	G	L	Y	D	D	I	L	G	L	M	R	R	Y	H	L	T	P	V	I	T	Q	E	V	G	E	A	M	T	I	I	G	L	V	S	A	G	L	G	V
Query Conservation
Alig confidence																																													.	.	.
Template Conservation																																													.	.	.
Template Sequence		I	G	E	V	K	D	I	L	V	A	S	P	Q	Y	L	S	S	H	P	Q	P	T	H	A	E	E	L	H	Q	H	Q	L	L	K	G	Y	P	L	L	K	W	Q	L	.	.	.	T	N	S	Q	G	E	T	V	V	N	S	D	R	G	R	F	Q	A	S	A	L	N	V	V	R	S	A	C	S	E	G	L	G	I
Template Known Secondary structure																			S				S	S	G	G	G	G	G	G	S						T	T			S				.	.	.			T	T	S										S				S	S										T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		243	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		S	I	L	P	A	S	F	K	R	V	Q	.	.	L	N	E	M	R	W	V	P	I	A	E	E	D	A	V	S	E	M	W	L	V	W	P	K	H	H	E	Q	S	P	A	A	R	N	F	R	I	H	L	L	N	A	L
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		T	L	M	P	D	V	M	L	R	E	F	L	E	D	G	S	L	V	Q	V	L	S	D	W	S	S	N	P	R	D	I	Y	M	L	Y	N	H	K	D	H	Q	P	E	K	V	R	L	F	I	D	F	V	I	G	Y	H
Template Known Secondary structure						G	G	G	T							T	S	S					T	T		B														S	S															S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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