Job Description P77559 Confidence 99.59% Date Thu Jan 5 12:30:33 GMT 2012 Rank 33 Aligned Residues 197 % Identity 15% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	L	R	I	G	F	T	S	S	A	P	F	I	R	A	V	S	D	T	L	S	L	F	R	R	D	Y	P	D	V	H	L	Q	T	R	E	M	N	T	R	E	Q	I	A	P	L	I	E	G	T	L	D	M	G	L	L	R	N	T	A	L	P	E	S	L	E	H	A	V	I	V	H	E	P	L	M	A	M	I
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	.	.	.	R	V	D	P	A	A	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P	L	C
Template Known Secondary structure																	T													T	T										S	.	.	.								T		S								S			T	T															B
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	D	H	P	L	A	N	N	P	N	V	T	L	A	E	L	A	K	E	P	F	V	F	F	D	P	H	V	G	T	G	L	Y	D	D	I	L	G	L	M	R	R	Y	H	L	T	P	V	I	T	Q	E	V	G	E	A	M	T	I	I	G	L	V	S	A	G	L	G	V	S	I	L	P	A	S	F	K	R	V
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		S	P	T	L	A	S	Q	I	Q	T	P	A	D	I	L	K	F	P	.	.	.	.	.	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T	H
Template Known Secondary structure							T	T		S	S	G	G	G	G	G	G	S		.	.	.	.	.					S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.						.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		Q	L	N	E	M	R	W	V	P	I	A	E	E	D	A	.	V	S	E	M	W	L	V	W	P	K	H	H	E	Q	S	P	A	A	R	N	F	R	I	H	L	L	N	A	L	R
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		L	L	S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H
Template Known Secondary structure					T	T	S	S	B							B		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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