 |
Job Description | P77559 | Confidence | 59.39% | Date | Thu Jan 5 12:30:33 GMT 2012 |
Rank | 282 | Aligned Residues | 128 |
% Identity | 13% | Template | c3cvgC_ |
PDB info |
PDB header:metal binding protein | Chain: C: PDB Molecule:putative metal binding protein; |
PDBTitle: crystal structure of a periplasmic putative metal binding protein
|
Resolution | 1.97 Å |
|
 |
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | |
|
|
|
|
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
P | L | M | A | M | I | P | H | D | H | P | L | A | N | N | P | N | V | T | L | A | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | A | K | E | P | F | V | F | F | D | P | H | V | G | T | G | L | Y | D | D | I | L | G | L | M | R | R | Y | H | L | T | P | V | . |
. |
. |
. |
. |
. |
. |
I | T | Q | E | V | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|   |
|   |   |   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|
|
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |
Template Sequence |   |
H | F | X | L | I | G | P | P | S | N | P | A | K | L | S | G | D | S | D | I | A | D | X | F | S | K | X | H | D | A | A | E | A | G | N | T | K | P | P | V | R | F | L | S | R | Y | D | K | S | A | T | N | I | K | E | A | E | L | W | L | S | I | G | Q | V | P | W | A | T | A | Y | S | T | W | Y | H | Q | Y | I | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| T | T |
| T | T |
|
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S | S | S |
|
|
|  |  |  |
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
| T | T | S | S | S |
|
| T | T |  |  |  |
|
| S |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
  |
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | A | M | T | I | I | G | L | V | S | A | G | L | G | V | S | I | L | P | A | S | F | K | R | V | Q | L | N | E | M | R | W | V | P | I | A | . |
. |
. |
. |
. |
. |
. |
. |
E | E | D | A | V | S | E | M | W | L | V | W | P | K | H | H | E | Q | S | P | A | A | R | N | F | R | I | H | L | L | N |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|   |   |
|   |
|   |   |
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|   |
|   |
|   |
|
|   |
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |
|
Template Sequence |   |
F | P | I | Q | A | L | T | A | A | I | L | L | R | E | Y | T | I | T | D | Y | G | T | Y | L | S | I | P | R | G | L | R | D | Q | X | V | I | Y | K | K | G | T | N | D | A | D | D | P | L | L | N | P | A | H | L | L | V | G | A | R | A | K | N | A | E | X | A | K | E | F | A | K | W | L | V | S |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  | T | T |
|  |  |  |  |  |
|
| S |
| T | T |
| T | T |  |  |  |  |  |  |  |  |
| S | S |
| S | S | T | T |  |  |  |  |  |  |  |  |  | T | S |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|