Job Description P77559 Confidence 30.75% Date Thu Jan 5 12:30:33 GMT 2012 Rank 373 Aligned Residues 179 % Identity 9% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

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		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	D	T	L	S	L	F	R	R	D	Y	P	D	V	H	L	Q	T	R	E	M	N	T	R	E	Q	I	A	P	L	I	E	G	T	L	D	M	G	L	L	R	N	T	A	L	P	E	S	L	E	H	A	V	I	V	H	E	P	L	M	A	M	I	P	H	D	H	P	L	A	N	N	P	N	V	T	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	E	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K	K	F	L	F	N	K	V	A	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	I	R	G	I
Template Known Secondary structure															T	T										G	G	G						G	G	G	S		S				S																S	S													T	T			S		S	S	G
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																																								.														.	.
Query SS confidence																																																								.														.	.
Query Sequence		E	L	A	K	E	P	F	V	F	F	D	P	H	V	G	T	G	L	Y	D	D	I	L	G	L	M	R	R	Y	H	L	T	P	V	I	T	Q	E	V	G	E	A	M	T	I	I	G	L	V	S	A	G	L	G	.	V	S	I	L	P	A	S	F	K	R	V	Q	L	.	.	N	E	M	R	W	V	P	I	A	E
Query Conservation																																																								.														.	.
Alig confidence																									.	.	.	.	.	.	.	.																								.														.	.
Template Conservation																									.	.	.	.	.	.	.	.
Template Sequence		E	D	L	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	D	.	.	.	.	.	.	.	.	N	G	R	P	F	E	I	A	Y	E	A	N	E	T	A	N	Q	L	K	S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N
Template Known Secondary structure		G	G		T	T																	T	T	.	.	.	.	.	.	.	.	T	T			S																S	S		S																	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	A	V	S	E	M	W	L	V	W	P	K	H	H	E	Q	S	P	A	A	R	N	F	R	I	H	L	L	N	A	L	R
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		V	L	S	N	A	K	V	Y	F	X	F	N	K	N	.	.	.	E	Q	T	L	S	D	D	I	D	K	A	L	Q	E	I	I
Template Known Secondary structure														G	G	.	.	.	G
Template Predicted Secondary structure																.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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