 |
Job Description | P06983 | Confidence | 91.77% | Date | Wed Jan 25 15:20:12 GMT 2012 |
Rank | 24 | Aligned Residues | 101 |
% Identity | 18% | Template | d2czla1 |
SCOP info | Periplasmic binding protein-like II
| Periplasmic binding protein-like II
| Phosphate binding protein-like
|
Resolution | 1.55 |
|
 |
  |   |
65 | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | |
|
. | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | L | E | V | A | L | L | E | N | R | A | D | I | A | V | H | S | M | K | D | V | P | V | E | F | P | Q | G | L | G | L | V | T | I | C | E | R | E | D | P | R | D | A | F | V | S | N | N | Y | D | S | L | D | A | L | P | A | G | S | I | V | G | T | S | . |
. |
S | L | R | R | Q | C | Q | L | A | E | R | R | P | D |
Query Conservation |   |
|
|
|   |
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |
|
|   |
|   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |
|
|
|
| . | . |
|   |
|
|   |
|
|
|   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |
|   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   | . |   |   |   |   |
|
| . |   |
|
|   |
|
|   |   |   |   |
|   |
|   |   |   |
|
|
|   |
|
|   |   |
Template Sequence |   |
T | L | N | R | W | A | L | E | G | R | L | P | L | T | K | L | S | Y | A | A | Y | A | Q | V | R | D | R | Y | V | A | L | R | S | G | G | A | L | G | R | G | V | G | P | L | V | V | A | R | . |
G | P | L | Q | A | L | . |
E | G | L | R | V | A | V | P | G | R | H | T | T | A | Y | F | L | L | S | L | Y | A | Q | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
| T | T | T |  |  |  |
| S | S | S |
|  |  |  | S | S |
|
|
|  |  |  |  | S | . | S |
|
| S |
|
| . | T | T |
|  |  |  |  | S |
| T | T | S |  |  |  |  |  |  |  |  |  |
| S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| . |
|
|  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
. | 90 | . | . | . | . | |
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
  |
  |   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | I | R | S | L | R | G | N | V | G | T | R | L | S | K | L | D | N | G | E | Y | D | A | I | I | L |
Query Conservation |   |
|   |   |   |   |
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   | . | . |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |
|   |
Template Sequence |   |
F | V | P | V | E | V | R | Y | . |
. |
D | R | I | L | P | M | V | A | Q | G | E | V | E | A | G | L | I |
Template Known Secondary structure |   |
|  |  |  |  |
|
| G | . | . | G | G |  |  |  |  |  |  | T | T | S | S | S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
| . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
119 | 120 | . | . | . | . | . | . | |
|
. | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|