Job Description P06983 Confidence 17.64% Date Wed Jan 25 15:20:12 GMT 2012 Rank 85 Aligned Residues 147 % Identity 9% Template d1us5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.5

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		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		D	N	V	L	R	I	A	T	R	Q	S	.	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S
Query Conservation													.
Alig confidence													.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	F	I	T	I	G	S	G	S	T	T	G	V	Y	F	P	V	A	T	G	I	A	K	L	V	N	D	A	N	V	G	I	R	A	N	A	R	S	T	G	G	S	V	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	A	I	N	A	G	E	F	E	M	A	L	A	Q
Template Known Secondary structure												T	T	S	S																T	S	S									S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S		S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.																				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		82													.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																																.	.																		.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.																																.	.																		.	.	.	.	.	.	.	.
Query Sequence		M	.	.	.	.	.	.	.	.	.	.	.	.	K	D	V	P	V	E	F	P	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	.	.	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	S	L	.	.	.	.	.	.	.	.	R	R	Q	C	Q	L	A	E	R
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.																																.	.																		.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																				.												.	.							.											.	.	.	.	.	.	.	.
Template Conservation																																		.																				.
Template Sequence		N	D	I	A	Y	Y	A	Y	Q	G	C	C	I	P	A	F	E	G	K	P	V	K	T	I	R	A	L	A	A	L	Y	P	.	E	V	V	H	V	V	A	R	K	D	A	G	I	R	T	V	A	D	L	.	K	G	K	R	V	V	V	G	D	V	G	S	G	T	E	Q	N	A	R	Q	I	L	E	A	Y	G	L
Template Known Secondary structure											T		S	S	T	T	T	T	T				T	T										.									T	T	S	S		S	S	G	G	G	G	.	T	T	S							T	T														T	T
Template Predicted Secondary structure																																		.																				.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	D	L	I	I	R	S	L	R	G	N	V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	D	D	L	G	Q	A	I	R	V	S	A	S	Q	G	I	Q	L	M	Q	D	K	R	A	D	A	L	F	Y	T
Template Known Secondary structure			G	G	G	S	S																T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions