Job Description P06983 Confidence 97.68% Date Wed Jan 25 15:20:12 GMT 2012 Rank 8 Aligned Residues 197 % Identity 14% Template d1p99a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.70

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M	K	D
Query Conservation
Alig confidence																	.	.										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																	.	.										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		K	V	T	I	G	V	A	S	N	D	T	K	A	W	E	.	.	K	V	K	E	L	A	K	K	D	.	.	D	I	D	V	E	I	K	H	F	S	D	Y	N	L	P	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	N	D	G	D	I	D	M	N	A	.	.	F	Q	H
Template Known Secondary structure								S	S	S							.	.							G	G	G	.	.	T									S	S	T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	S	S				.	.
Template Predicted Secondary structure																	.	.										.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																				.	.	.	.	.	.	.	.	.	90	.			.	.	.
		85	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure								.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	V	E	F	P	.	.	.	.	.	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	S	L	R	R	Q	C	Q	L	A	E	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																																								.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.
Template Sequence		F	A	F	L	D	Q	Y	K	K	A	H	K	G	T	K	I	S	A	L	S	T	T	V	L	A	P	L	G	I	Y	S	D	K	I	K	D	V	K	K	V	K	D	G	A	K	V	V	I	P	N	.	D	V	S	N	Q	A	R	A	L	K	L	L	E	A	A	G	L	I	K	L	K	K	D	F	G	L	A	G	T
Template Known Secondary structure													T	T																			S	S		S		G	G	G			T	T								.	S														T	T	S					T	T			T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
										141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	P	D	L	I	I	R	S	L	R	G	N	V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A	V	A	G	L	K	R	L	G	L	E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	C	R	L	.	.	.	D	D
Query Conservation		.	.	.	.	.	.	.	.																																																																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.							.	.	.	.																																																										.	.	.
Template Conservation																.	.	.	.
Template Sequence		V	K	D	I	T	S	N	P	K	H	L	K	I	T	.	.	.	.	A	V	D	A	Q	Q	T	A	R	A	L	S	D	V	D	I	A	V	I	N	N	G	V	A	T	K	A	G	K	D	P	K	N	D	P	I	F	L	E	K	S	N	S	D	A	V	K	P	Y	I	N	I	V	A	V	N	D	K	D	L	D	N
Template Known Secondary structure		G	G	G					T	T						.	.	.	.				G	G	G	T	T	G	G	G	G	T	S	S												T	T			T	T	T	S		S						S	S	G	G	G	G	G	G								G	G	G	T	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	T	R	E	L	L	A	A	L	N	H	H	E	T	A	L	R	V	T	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	Y	A	K	I	V	E	L	Y	H	S	K	E	A	Q	K	A	L	Q	E	D
Template Known Secondary structure													S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions