Job Description P06983 Confidence 97.28% Date Wed Jan 25 15:20:12 GMT 2012 Rank 10 Aligned Residues 199 % Identity 21% Template c3tqwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M	K	D
Query Conservation
Alig confidence																												.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	V	R	V	G	T	I	A	G	P	E	T	Q	L	X	E	V	A	K	Q	V	A	L	N	R	Y	.	.	G	L	H	V	N	I	I	T	F	S	D	Y	N	T	P	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	D	G	S	V	D	A	N	X	F	Q	H	L	P
Template Known Secondary structure									T	T																		.	.										S		T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S		S
Template Predicted Secondary structure																												.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure								.	.																																								.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																																								.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	V	E	F	P	.	.	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	S	.	.	.	.	.	.	.	L	R	R	Q	C	Q	L	A	E	R	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.																																								.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																																								.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	K	A	Q	I	E	X	R	G	Y	K	I	V	S	I	G	K	T	F	V	Y	P	X	G	L	Y	S	K	K	I	T	A	L	T	Q	L	K	T	G	A	K	I	A	V	P	S	D	P	S	N	E	A	R	A	L	L	L	L	E	K	A	Q	L	I	Q	L	K	T	H	I	N	A	T	P	X	D	I	A	S
Template Known Secondary structure																														S	S		S	S	G	G	G			T	T								S														T	T	S											G	G	G
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
					142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	L	I	I	R	S	L	R	G	N	V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A	V	A	G	L	K	R	L	G	L	E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	C	R	L	D	D	S	R	T	R	E	L	L	A	A
Query Conservation		.	.	.
Alig confidence		.	.	.													.	.	.	.																																										.
Template Conservation																	.	.	.	.																																										.
Template Sequence		N	P	K	K	L	K	I	V	E	L	D	A	A	Q	L	.	.	.	.	S	R	S	L	G	D	V	D	L	A	A	I	N	T	N	Y	A	I	P	A	G	L	S	P	S	R	D	A	L	L	T	E	G	P	N	S	P	Y	A	N	V	.	V	A	V	R	E	D	D	K	N	D	P	R	L	K	Q	L	V	S	A
Template Known Secondary structure			T	T									G	G	G	G	.	.	.	.	G	G		T	T	T		S										G	G	G	T			T	T	T	T		S					S	S	S	S					.					G	G	G	T	T
Template Predicted Secondary structure																	.	.	.	.																																										.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	H	H	E	T	A	L	R	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	S	P	A	V	L	S	A	A	K
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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