Job Description P06983 Confidence 93.01% Date Wed Jan 25 15:20:12 GMT 2012 Rank 20 Aligned Residues 203 % Identity 12% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M	K
Query Conservation
Alig confidence																													.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	V	K	I	G	Y	V	N	W	G	G	E	T	A	A	T	N	V	L	K	V	V	F	E	K	M	.	.	G	Y	N	A	E	I	F	S	V	.	T	T	S	I	M	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V
Template Known Secondary structure																												T	.	.	T									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	S	S
Template Predicted Secondary structure																													.	.										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.																				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		84	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure								.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		D	V	P	V	E	F	.	.	.	.	.	P	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	.	.	D	S	L	D	A	L	P	.	.	.	.	.	.	A	G	S	I	V	G	T	S	S	.	.	.	.	.	.	.	L	R	R	Q	C	Q	L	A	E	R	R	P	D	L
Query Conservation								.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																									.	.								.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N	Y	E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y
Template Known Secondary structure		T	T	T	T								G	G	G																			T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		144	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.
Predicted Secondary structure							.	.																						.	.																																							.	.	.
Query SS confidence							.	.																						.	.																																							.	.	.
Query Sequence		I	I	R	S	L	.	.	R	G	N	V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	.	.	A	V	A	G	L	K	R	L	G	L	E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	C	R	L	.	.	.	D	D	S	R	T	R	E	L	L
Query Conservation							.	.																						.	.																																							.	.	.
Alig confidence							.	.																						.	.											.	.	.	.	.																								.	.	.
Template Conservation																																										.	.	.	.	.
Template Sequence		E	L	V	P	S	S	E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E	W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y	D	I	.	.	.	.	.	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G	L	E	N	D	D	F	D	A	Y	Y	V	F
Template Known Secondary structure																					T	T										S		T					S			.	.	.	.	.				B		T	T		T	T		S	S									T	T
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	N	H	H	E	T	A	L	R	V	T	A	E	R	A	M
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		D	H	F	.	Y	W	S	D	D	L	I	L	P	L	M	D	K	N
Template Known Secondary structure					.
Template Predicted Secondary structure					.
Template SS confidence
		239	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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