Job Description P06983 Confidence 16.80% Date Wed Jan 25 15:20:12 GMT 2012 Rank 90 Aligned Residues 197 % Identity 14% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	N	V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S
Query Conservation
Alig confidence											.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	D	Q	T	F	T	I	A	T	.	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	F	L	P	L	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R
Template Known Secondary structure											.							T														T	T										G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G							T	S			S
Template Predicted Secondary structure											.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		82	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure											.	.	.	.																																													.	.	.	.
Query SS confidence											.	.	.	.																																													.	.	.	.
Query Sequence		M	K	D	V	P	V	E	F	P	.	.	.	.	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	S	L	R	R	Q	C	.	.	.	.	Q	L	A	E	R	R	P	D	L	I	I	R	S	L	R	G	N	V	G
Query Conservation											.	.	.	.																																													.	.	.	.
Alig confidence											.	.	.	.																.	.	.	.																										.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		P	T	G	P	V	E	P	L	R	S	E	I	L	G	R	V	G	V	L	C	L	L	S	K	Q	H	P	L	.	.	.	.	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	L	R	A	Y	H	L	E
Template Known Secondary structure			S	S			T	T	S																T	T	S	G	G	.	.	.	.	G	S	S										S						S													T	S	S	S										S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	.	.	.	L	A	V	A	G	L	K	R	L	G	L	E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	C	R	L	D	D	S	R	T	R	E	L	L	A	A	L	N	H	H	E	T	A	L	R	V
Query Conservation																	.	.	.
Alig confidence																	.	.	.												.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		A	A	L	A	I	V	D	T	L	P	I	I	I	T	V	P	A	D	L	A	Y	L	V	A	E	R	Y	D	L	.	.	.	.	.	V	V	K	P	L	P	F	Q	F	T	P	F	D	Y	S	X	I	W	H	A	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V	R	E	E	C	S	R	L	I	A
Template Known Secondary structure								T	T	S																			T		.	.	.	.	.						S	S													G	G	G	T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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