Job Description P06983 Confidence 33.74% Date Wed Jan 25 15:20:12 GMT 2012 Rank 61 Aligned Residues 152 % Identity 18% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

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		5	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		V	L	R	I	A	T	.	.	.	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S
Query Conservation								.	.	.
Alig confidence								.	.	.																						.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	N	F	G	I	I	S	T	E	S	S	Q	N	L	K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	T	.	G	Y	Q	V	K	A	F	F	A	P	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	I	I	Q	G	X	R	F	D	K	V	D	I	A	W	Y	G
Template Known Secondary structure										S	S																					.	S	S								S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S		S
Template Predicted Secondary structure																																.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70																				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		82	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.							120	.	.	.	.	.	.	.	.	.									130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure								.	.																		.	.	.																.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence								.	.																		.	.	.																.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		M	K	D	V	P	V	.	.	E	F	P	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	.	.	.	R	D	A	F	V	S	N	N	Y	D	S	L	D	A	L	.	.	.	.	.	.	P	A	G	S	I	V	G	T	S	S	.	.	.	.	.	.	.	.	L	R	R	Q	C	Q	L	A	E	R	R	P	D
Query Conservation								.	.																		.	.	.																.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence								.	.																		.	.	.																.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	A	A	X	E	A	V	D	R	A	H	G	E	I	F	A	Q	T	V	A	A	S	G	A	P	G	Y	W	S	L	L	I	A	N	K	D	S	K	I	D	S	L	E	D	X	L	A	N	A	K	S	L	T	F	G	N	G	D	P	N	S	T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D
Template Known Secondary structure												S											T	T			S										T	T		S			S							T	G	G	G								T	T		T	T	T	T							T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
						143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	I	I	R	S	L	R	G	N	V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A	V	A	G	L	K	R	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.					.
Template Conservation										.
Template Sequence		P	V	K	A	F	K	R	T	.	L	N	S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T	E	G	X	E	R	L
Template Known Secondary structure						S	S			.														T	T	S	S	S
Template Predicted Secondary structure										.
Template SS confidence
		169	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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