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Job DescriptionP06983
Confidence95.61%DateWed Jan 25 15:20:12 GMT 2012
Rank17Aligned Residues145
% Identity12%Templatec3l6gA_
PDB info PDB header:glycine betaine-binding proteinChain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  DNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSM
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Template Sequence  DKKVDLVYMNWDSEVASINVLTQAMKEH. . GFDVKTTAL. DNA. . . . . . . . . . . . . . . . . . . VAWQTVANGQADGMVSAW
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   320.........330.........340....... ..350...... ... 360.........370.......
 
   83...... 90.........100.........110... ......120 ........ .130.........140.......
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Query Sequence  KDVPVEF. . . . . PQGLGLVTICEREDPRDAFVSNNY. . DSLDALP. . . AGSIVGTS. . . . . SLRRQCQLAERRPDLIIRS
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Template Sequence  LPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKL
Template Known Secondary structure  TTTTGGGTTS


BGGG
SSGGGG


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   378.380.........390.........400.........410.........420.........430.........440.........450.......
 
   148.150...... ...160.........
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Query Sequence  LRGNVGTRL. . . . SKLDNGEYDAIIL
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Template Sequence  VPSSSGAMTVALGEAIKQHKDIVITG
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   458.460.........470.........480...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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