Job Description P06983 Confidence 13.49% Date Wed Jan 25 15:20:12 GMT 2012 Rank 97 Aligned Residues 137 % Identity 13% Template c3jv9B_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis Resolution 2.39 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M
Query Conservation
Alig confidence																									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Sequence		E	G	A	F	K	L	G	L	I	F	T	V	A	P	Y	L	L	P	K	L	I	V	S	.	L	R	R	T	A	P	K	X	P	L	X	L	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	T	H	T	L	T	E	S	L	K	R	G	D	V	D	A	I	I	V	.	.
Template Known Secondary structure											T	T	T												.						T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	S	S	S					.	.
Template Predicted Secondary structure																									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.																					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.
Query Sequence		K	D	V	P	V	E	F	P	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	.	.	.	.	.	.	.	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	S	L	R	R	Q	C	Q	L	A	E	R	R	P	D	L	I	I	R	S	L	R	G	N	V	G	T	R
Query Conservation																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																												.	.	.	.	.	.	.																																			.	.
Template Conservation		.	.	.	.																																																																					.	.
Template Sequence		.	.	.	.	A	E	P	F	Q	E	P	G	I	V	T	E	P	L	Y	D	E	P	F	F	V	I	V	P	K	G	H	S	F	E	E	L	D	A	V	S	P	R	X	L	G	E	E	Q	V	L	L	L	T	E	G	N	C	X	R	D	Q	V	L	S	S	C	T	N	T	L	Q	G	.	.	S	S	I	N	T	I
Template Known Secondary structure		.	.	.	.		S	S				T	T																	T	T		G	G	G	G		S	S			S	S	G	G	G	G	S							T	T									T	T								.	.	S	S
Template Predicted Secondary structure		.	.	.	.																																																																					.	.
Template SS confidence
						147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220
		156	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	L	D	N	G	E	Y	D	A	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	H	X	V	A	S	G	L	A	I	S	V	L
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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