Job Description P06983 Confidence 95.25% Date Wed Jan 25 15:20:12 GMT 2012 Rank 19 Aligned Residues 139 % Identity 15% Template c3hn0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Resolution 1.75 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M
Query Conservation
Alig confidence																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	T	V	I	K	V	S	V	L	R	G	P	S	V	I	A	F	A	D	W	L	E	N	P	P	I	I	D	.	.	N	K	K	V	Q	V	K	V	V	D	S	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	A	L	L	I	K	Q	E	T	D	I	A	V	L	P	X
Template Known Secondary structure											S	S	T					T						S					T	.	.	T									S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T			S
Template Predicted Secondary structure																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.																				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																	.	.	.																.	.	.	.	.	.
Query SS confidence																																	.	.	.																.	.	.	.	.	.
Query Sequence		K	D	V	P	V	E	F	P	Q	G	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	.	.	.	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	.	.	.	.	.	.	S	L	R	R	Q	C	Q	L	A	E	R	R	P	D	L	I	I	R	S	L	R	G	N	V	G
Query Conservation																																	.	.	.																.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.								.	.	.							.									.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.																	.
Template Sequence		I	N	A	A	N	L	Y	N	K	G	I	K	I	K	L	A	.	.	.	.	.	.	.	.	G	C	P	I	W	G	T	L	Y	L	V	E	K	T	P	L	.	K	E	P	A	L	Y	V	F	G	N	G	T	T	P	D	I	L	T	R	Y	Y	L	G	R	Q	R	L	D	Y	P	L	N	Y	A	F	N	T	A	G
Template Known Secondary structure										T	T		S					.	.	.	.	.	.	.	.														S	S		.		S						S	S	T	T	S														T								S			S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.																	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	T	Q	G	I	L	A	G	K	V	N	R	A	V	L	G	E
Template Known Secondary structure										T	S		S						T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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