Job Description P06983 Confidence 49.21% Date Wed Jan 25 15:20:12 GMT 2012 Rank 49 Aligned Residues 176 % Identity 13% Template c2y7iB_ PDB info PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351. Resolution 1.90 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M	K	D	V	P	V	E	F	P	Q	G	L	G	L	V	T	I	C
Query Conservation
Alig confidence													.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	V	A	N	A	V	C	K	E	M	.	.	Q	A	E	C	S	F	T	N	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	S	L	I	P	S	L	R	F	K	K	F	D	A	V	I	A	G	M	D	M	T	P	K	R	E	Q	Q	V	S	F	S	Q	P	Y	Y
Template Known Secondary structure												T	.	.	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G							T	T	S		S				S	S		B							T	T	S				S		S	B
Template Predicted Secondary structure													.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70																					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	E	D	P	R	D	A	F	V	S	N	N	Y	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	S	L	R	R	Q	C	Q	L	A	E	R	R	P	D	L	I	I	R	S	L	R	G	N	V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A	V	A	G	L	K	R	L	G	L
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		E	G	L	S	A	V	V	V	T	R	K	G	A	Y	H	T	F	A	D	L	K	G	K	K	V	G	L	E	N	G	T	T	H	Q	R	Y	L	Q	D	K	Q	Q	A	I	T	P	V	A	Y	.	D	S	Y	L	N	A	F	T	D	L	K	N	N	R	L	E	G	V	F	G	D	V	A	A	I	G	K	W	L	K
Template Known Secondary structure												T	T	T			S	G	G	G	G	T	T							T	T	S											T	T	S						.	S											T	T	S		S														T
Template Predicted Secondary structure																																																			.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	C	R	L	D	D	S	R	T	R	E	L	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	P	D	Y	A	I	M	D	E	R	A	S	D	P	D	Y	Y	G	K	G	L	G	I	A	V	R	K	D	N	D	A	L	L	Q	E	I	N	A
Template Known Secondary structure		T		T	T					S	S		B			T	T	T	S		S		B						T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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