Job Description P06983 Confidence 97.68% Date Wed Jan 25 15:20:12 GMT 2012 Rank 7 Aligned Residues 210 % Identity 16% Template c2x26A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli Resolution 1.75 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	L	R	I	A	T	R	Q	S	P	L	A	L	W	Q	A	H	Y	V	K	D	K	L	M	A	S	H	P	G	L	V	V	E	L	V	P	M	V	T	R	G	D	V	I	L	D	T	P	L	A	K	V	G	G	K	G	L	F	V	K	E	L	E	V	A	L	L	E	N	R	A	D	I	A	V	H	S	M
Query Conservation
Alig confidence																						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	A	L	R	I	G	Y	Q	K	G	S	I	G	M	V	L	A	K	S	.	H	Q	L	L	E	K	R	Y	P	E	S	K	I	S	W	V	E	F	P	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	L	E	A	L	N	V	G	S	I	D	L	G	S	T	G	D
Template Known Secondary structure			S								T	T										.	T	T							T	T	S								S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	S		S						S
Template Predicted Secondary structure																						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure												.	.																						.	.	.																.	.	.	.	.	.
Query SS confidence												.	.																						.	.	.																.	.	.	.	.	.
Query Sequence		K	D	V	P	V	E	F	P	Q	G	.	.	L	G	L	V	T	I	C	E	R	E	D	P	R	D	A	F	V	S	N	N	Y	.	.	.	D	S	L	D	A	L	P	A	G	S	I	V	G	T	S	.	.	.	.	.	.	S	L	R	R	Q	C	Q	L	A	E	R	R	P	D	L	I	I	R	S	L	R	G	N
Query Conservation												.	.																						.	.	.																.	.	.	.	.	.
Alig confidence												.	.																						.	.	.							.									.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		I	P	P	I	F	A	Q	A	A	G	A	D	L	V	Y	V	G	V	E	P	P	K	P	K	A	E	V	I	L	V	A	E	N	S	P	I	K	T	V	A	D	L	.	K	G	H	K	V	A	F	Q	K	G	S	S	S	H	N	L	L	L	R	A	L	R	Q	A	G	L	K	F	T	D	I	Q	P	T	Y	L	T
Template Known Secondary structure										T	T													G	G	G							T	T		S			S	G	G	G	G	.	T	T	S						T	T	S													T	T			G	G	G	S
Template Predicted Secondary structure																																												.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		V	G	T	R	L	S	K	L	D	N	G	E	Y	D	A	I	I	L	A	V	A	G	L	K	R	L	G	L	E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	.	.	C	R	L	D	D	S	R	T	R	E	L	L	A	A	L	N	H	H	E	T	A	L	R	V	T
Query Conservation																																																							.	.
Alig confidence																																			.																				.	.
Template Conservation																																			.
Template Sequence		P	A	D	A	R	A	A	F	Q	Q	G	N	V	D	A	W	A	I	W	D	P	Y	Y	S	A	A	L	L	Q	G	G	V	R	.	V	L	K	D	G	T	D	L	N	Q	T	G	S	F	Y	L	A	A	R	P	Y	A	E	K	N	G	A	F	I	Q	G	V	L	A	T	F	S	E	A	D	A	L	T	R	S	Q
Template Known Secondary structure											T	T	S	S	S						T	T									S	S			.					S	T	T	S																	T																					T
Template Predicted Secondary structure																																			.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	Q	S	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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