Job Description P06983 Confidence 36.77% Date Wed Jan 25 15:20:12 GMT 2012 Rank 58 Aligned Residues 176 % Identity 15% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.															.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.								.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																.			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.															.	.	.	.	.	.	.
Query SS confidence																.			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.															.	.	.	.	.	.	.
Query Sequence		P	L	A	K	V	G	G	K	G	L	F	V	K	E	.	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	L	L	E	N	R	A	D	I	A	V	.	.	.	H	S	M	K	D	V	P	V	E	F	P	Q	G	L	.	.	.	.	.	.	.	G	L	V	T	I	C	E	R	E	D	P	R	D
Query Conservation																.			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.															.	.	.	.	.	.	.
Alig confidence																.			.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.															.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I	T	E	G	I	I	T	N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N
Template Known Secondary structure									T	T					T	T		T								S	S												T	T	T	T	S		S						T	T							T	T	T	T	T	T	T													B
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																			.	.	.	.	.	.	130									.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		A	F	V	S	N	N	Y	D	S	L	D	A	L	P	A	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	G	T	S	S	L	.	.	.	.	.	.	.	.	R	R	Q	C	Q	L	A	E	R	R	P	D	L	I	I	R	S	L	R	G	N	V	G	T	R	L	S	K	L	D
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A	G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R
Template Known Secondary structure							G	G	G	T	T	T	T		S	S			G	G	G						T						S	S							S	S	T	T	S													T	T			T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		N	G	E	Y	D	A	I	I	L	A	V	A	G	L	K	R	L	G	L	E	S	R	I	R	A	A	L	P	P	E	I	S	L	P	A	V	G	Q	G	A	V	G	I	E	.	.	.	C	R	L	D	D	S	R	T	R	E	L	L	A	A	L	N	H	H	E	T	A	L	R
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence		N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K	A	L	L	K	G	I	M	E	A	Q	Q	W	I	D
Template Known Secondary structure			T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions