 |
Job Description | P25742 | Confidence | 31.10% | Date | Thu Jan 5 11:42:29 GMT 2012 |
Rank | 80 | Aligned Residues | 93 |
% Identity | 10% | Template | c3fxaA_ |
PDB info |
PDB header:sugar binding protein | Chain: A: PDB Molecule:sis domain protein; |
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
|
Resolution | 1.60 Å |
|
 |
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | |
|
|
|
|
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
D | N | D | K | F | S | K | V | I | D | A | L | Q | Q | R | G | Y | Q | V | V | L | T | C | G | P | S | A | D | D | L | A | C | V | D | E | I | A | R | G | C | E | T | K | P | I | T | G | L | A | G | K | T | R | F | P | E | L | G | A | L | I | D | H | A | V | L | F | I | G | V | D | S | A | . |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|   |
|
|   |   |
|
|   |   |   |   |
|   |
|   |   |
|
|
| . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|
|   |
|   |   |   |   |
Template Sequence |   |
S | E | E | A | L | V | K | T | V | E | K | I | A | E | C | T | G | K | I | V | V | A | G | C | G | T | S | G | V | A | A | K | K | L | V | H | S | F | N | C | I | E | R | P | A | V | F | L | T | P | S | D | A | V | H | G | T | L | G | V | L | Q | K | E | D | I | L | I | L | I | S | K | G | G | N | T | G | E | L | L |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|  |  |  |  |
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
|
|  |  |  |  | T | T | T | G | G | G | G |
|
| T | T |
|  |  |  |  |  |
| S | S | S |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
  |   |
|
261 | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Predicted Secondary structure |   |
. |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
P | G | H | I | A | A | A | V | K | T | P | V | I | S | L | F | G | A | T | D |
Query Conservation |   |
. |   |   |
|
|
|   |
|
|
|   |
|   |
|   |
|   |
|   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |   |
|   |   |
|
|   |
|
|   |   |   |   |
Template Sequence |   |
N | L | I | P | A | C | K | T | K | G | S | T | L | I | G | V | T | E | N | P | D |
Template Known Secondary structure |   |
T | T |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  | S |
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|