Job Description P25742 Confidence 98.72% Date Thu Jan 5 11:42:29 GMT 2012 Rank 8 Aligned Residues 286 % Identity 11% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	G	D	M	L	L	T	T	P	V	I	S	T	L	K	Q	N	Y	P	D	A	K	I	D	M	L	L	Y	Q	D	T	I	P	I	L	S	E	N	P	E	I	N	A	L	Y	G	I	S	N	K	G	A	G	T	F	D	K	I	K	N	V	L	S	L	I	K	T	L	R	A	N	N	Y	D	L	V	I	N	L
Query Conservation
Alig confidence																						.																																		.	.	.	.	.	.	.	.	.
Template Conservation																						.																																		.	.	.	.	.	.	.	.	.
Template Sequence		S	I	G	E	F	N	T	F	L	P	I	L	K	E	L	K	R	E	H	R	.	I	L	L	T	Y	F	S	P	R	A	R	E	Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	D	N	P	F	.	.	.	.	.	.	.	.	.	S	V	K	R	F	E	E	L	S	K	P	K	A	L	I	V	V
Template Known Secondary structure		S															T	T	T	S		.						S		T	T							T	T	G	G	G		S								S	S			.	.	.	.	.	.	.	.	.												S
Template Predicted Secondary structure																						.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80										.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	Q	W	M	V	A	L	L	V	R	C	L	P	A	R	M	K	I	S	Q	L	Y	G	H	R	Q	H	G	I	W	K	K	S	F	T	H	L	A	P	I	H	G	T	H	I	V	E	R	N	L	S	V	L	E	P	L	G	I	T	D	F	Y	T	D	T	T	M	S	Y	A	E	D	C	W	K	K	M	R	R
Query Conservation
Alig confidence													.											.	.	.																																																	.	.	.	.	.	.	.
Template Conservation													.											.	.	.																																																	.	.	.	.	.	.	.
Template Sequence		E	R	E	F	W	P	S	L	I	I	F	.	T	K	V	P	K	I	L	V	N	A	.	.	.	Y	A	K	G	S	L	I	E	K	I	L	S	K	K	F	D	L	I	I	M	R	T	Q	E	D	V	E	K	F	K	T	F	G	A	K	R	V	F	S	C	G	N	L	K	F	I	C	Q	.	.	.	.	.	.	.
Template Known Secondary structure		S											.			S								.	.	.												G	G	G		S					S	S									T	T	T		S	S							G	G	G				.	.	.	.	.	.	.
Template Predicted Secondary structure													.											.	.	.																																																	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.																																		.	.
Query SS confidence																																														.																																		.	.
Query Sequence		E	L	D	A	L	G	V	K	D	H	Y	V	V	I	Q	P	T	A	R	Q	I	F	K	C	W	D	N	D	K	F	S	K	V	I	D	A	L	Q	Q	R	G	Y	Q	V	.	V	L	T	C	G	P	S	A	D	D	L	A	C	V	D	E	I	A	R	G	C	E	T	K	P	I	T	G	L	A	G	K	T	.	.
Query Conservation																																														.																																		.	.
Alig confidence		.	.																				.			.	.																			.																																		.	.
Template Conservation		.	.																				.			.	.
Template Sequence		.	.	K	G	K	G	I	K	L	K	G	E	F	I	V	A	G	S	I	H	T	.	G	E	.	.	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R	H	I	E	N	A	K	I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V
Template Known Secondary structure		.	.								S	S										G	.	G	G	.	.													T	T		T	T								S	S	G	G	G											T	T						T	T				S	S
Template Predicted Secondary structure		.	.																				.			.	.
Template SS confidence
				167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
						240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.				.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.															.					.	.	.								.	.																								.
Query SS confidence		.	.	.	.															.					.	.	.								.	.																								.
Query Sequence		.	.	.	.	R	F	P	E	L	G	A	L	I	D	H	A	V	L	.	F	I	G	V	.	.	.	D	S	A	P	G	H	I	.	.	A	A	A	V	K	T	P	V	I	S	L	F	G	A	T	D	H	V	F	W	R	P	W	.	T	E	N	I	I	Q	F	W	A	G	N	Y	Q	K	M	P	T	R	H	E	L
Query Conservation		.	.	.	.															.					.	.	.								.	.																								.
Alig confidence		.	.	.	.															.					.	.	.								.	.																								.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y	G	P	Y	T	H	K	V	N	D	L	K	E	F	L	E	K	E	G	A	G	F	E	V	K	N	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T						G	G	G								S	S	S	S	T	T											T	T							S			T	T	S										T	T							S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	N	K	K	Y	L	S	V	I	P	A	E	D	V	I	A	A	T	E	K	L	L	P	E	D	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	T	E	L	V	T	K	L	T	E	L	L	S	V	K	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.														S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions