Job Description P25742 Confidence 97.16% Date Thu Jan 5 11:42:29 GMT 2012 Rank 24 Aligned Residues 297 % Identity 12% Template c2p6pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 Resolution 1.88 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	M	L	L	T	T	P	V	I	S	T	L	K	Q	N	Y	P	D	A	K	I	D	M	L	L	Y	Q	D	T	I	P	I	L	S	E	N	P	E	I	N	A	L	Y	G	I	S	N	K	G	A	G	T	F	D	K	I	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																				.
Template Sequence		A	T	V	F	A	L	A	P	L	A	T	A	A	R	N	A	.	.	G	H	Q	V	V	M	A	A	N	Q	D	M	G	P	V	V	T	G	V	.	G	L	P	A	V	A	T	T	D	L	P	I	R	H	F	I	T	T	D	R	E	G	R	P	E	A	I	P	S	D	P	V	A	Q	A	R	F	T	G	R	W	F
Template Known Secondary structure																	T	.	.	T									G	G	G						T	T	.	T						S		S	S		G	G	G	G	S		B		T	T	S		B					S	S
Template Predicted Secondary structure																		.	.																				.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
									64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																																								.	.
Query SS confidence		.	.	.	.	.	.	.																																																																								.	.
Query Sequence		.	.	.	.	.	.	.	V	L	S	L	I	K	T	L	R	A	N	N	Y	D	L	V	I	N	L	T	D	Q	W	M	V	A	L	L	V	R	C	L	P	A	R	M	K	I	S	Q	L	Y	G	H	R	Q	H	G	I	W	K	K	S	F	T	H	L	A	P	I	H	G	T	H	I	V	E	R	N	L	S	.	.
Query Conservation		.	.	.	.	.	.	.																																																																								.	.
Alig confidence		.	.	.	.	.	.	.																																																																								.	.
Template Conservation
Template Sequence		A	R	M	A	A	S	S	L	P	R	M	L	D	F	S	R	A	W	R	P	D	L	I	V	G	G	T	M	S	Y	V	A	P	L	L	A	L	H	L	G	V	P	H	A	R	Q	T	W	D	A	V	D	A	D	G	I	H	P	G	A	D	A	E	L	R	P	E	L	S	E	L	G	L	E	R	L	P	A	P	D
Template Known Secondary structure																						S						T	T		T										T								S	S	S				T	T	T								T							T	T		S	S					S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
							135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	V	L	E	P	L	G	I	T	D	F	Y	T	D	T	T	M	S	Y	A	E	D	C	W	K	K	M	R	R	E	L	D	A	L	G	V	K	D	H	Y	V	V	I	Q	P	T	A	R	Q	I	F	K	C	W	D	N	D	K	F	S	K	V	I	D	A	L	Q	Q	R	G	Y	Q	V	V	L	T
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																															.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		L	F	I	D	I	C	P	P	S	L	R	P	A	N	A	A	P	A	R	M	M	R	H	V	A	T	S	R	Q	C	P	L	E	P	W	M	Y	T	R	D	T	R	Q	R	V	L	V	T	S	G	D	.	.	.	.	.	.	R	N	F	D	F	L	R	G	L	A	K	D	L	V	R	W	D	V	E	L	I	V	A
Template Known Secondary structure							S		G	G	G	S		S	S																				G	G	G	G				S	S										.	.	.	.	.	.																T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		C	G	P	S	A	D	D	L	A	C	V	D	E	I	A	R	G	C	E	T	K	P	I	T	G	L	A	G	K	T	R	F	P	E	L	G	A	L	I	D	H	A	V	L	F	I	G	V	D	S	.	A	P	G	H	I	A	A	A	V	K	T	P	V	I	S	L	F	G	A	T	D	H	V	F	W	R	P	W	T
Query Conservation																																																				.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	D	T	V	A	E	A	L	R	A	E	V	P	Q	A	R	V	G	W	T	P	.	.	.	.	.	.	.	.	.	.	.	.	L	D	V	V	A	P	T	C	D	L	L	V	H	H	A	G	G	V	S	T	L	T	G	L	S	A	G	V	P	Q	L	L	I	P	K	G	S	V	L	E	A	P	A	R	R	V
Template Known Secondary structure															T	T	S			S				.	.	.	.	.	.	.	.	.	.	.	.					G	G	G		S							S		S									T									S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.													.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	I	I	Q	F	W	A	G	N	Y	Q	K	M	P	T	R	H	E	L	D	R	N	K	K	Y	L	S	V	I	P	A	E	D	V	I	A	A	T	E	K	L	L	P	E	D	A	P	S	A
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	Y	G	A	A	I	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	E	D	S	T	E	A	I	A	D	S	C	Q	E	L	Q	A	K	D	T	Y	A	R
Template Known Secondary structure					T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.																	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions