Job Description P0CE47 Confidence 98.02% Date Thu Jan 5 11:30:14 GMT 2012 Rank 305 Aligned Residues 133 % Identity 23% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		E	K	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	.	.	.	.	.	.	.	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A
Template Known Secondary structure						T	S		S										T	T	S	S															T	T										T	T															T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
										72	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.														.	.	.	.															.	.
Query SS confidence		.	.	.	.	.	.	.	.														.	.	.	.															.	.
Query Sequence		.	.	.	.	.	.	.	.	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	.	.	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K
Query Conservation		.	.	.	.	.	.	.	.														.	.	.	.															.	.
Alig confidence		.	.	.	.	.	.	.	.														.	.	.	.															.	.														.																					.	.
Template Conservation																																																								.																					.	.
Template Sequence		Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	.	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	.	.	L	T	K
Template Known Secondary structure												T		S								S	S			S	S	S																S								T	T		T	.	T	T												S							.	.			S
Template Predicted Secondary structure																																																								.																					.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.
		138	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		272	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions