Job Description P0CE47 Confidence 97.97% Date Thu Jan 5 11:30:14 GMT 2012 Rank 309 Aligned Residues 135 % Identity 19% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.																				.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.																				.	.	.
Query Sequence		S	K	E	K	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	.	.	.	.	.	.	.	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.																				.	.	.
Alig confidence																																																					.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K
Template Known Secondary structure		S								S	S	S									T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
												72	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.														.	.	.	.															.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.														.	.	.	.															.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	T	P	T	R	H	Y	A	H	V	D	C	P	G	.	.	.	.	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	.	.	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L
Query Conservation		.	.	.	.	.	.	.	.	.	.														.	.	.	.															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.														.	.	.	.															.	.														.																					.	.
Template Conservation																																																										.																					.	.
Template Sequence		L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	.	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	.	.	V
Template Known Secondary structure													T	T		S										S	S																			S								G	G	G	G	.	G	G											S		T	T					.	.
Template Predicted Secondary structure																																																										.																					.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.
		136	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	C	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	L	D
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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