Job Description P0CE47 Confidence 98.76% Date Thu Jan 5 11:30:14 GMT 2012 Rank 236 Aligned Residues 171 % Identity 18% Template c3cphA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein sec4; PDBTitle: crystal structure of sec4 in complex with rab-gdi Resolution 2.90 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	I	L	L	I	G	D	S	G	V	G	K	S	C	L	L	V	R	F	V	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	N	P	S	F	I	T	T	I	G	I	D	F	K	I	K	T	V	D	I	N	G	K	K	V	K	L	Q	L	W	D	T	A	G	Q	E	R	F	R	T	I	T
Template Known Secondary structure									S	T	T	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S				S											T	T											T	T	G	G	G	G	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.															.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	.	.	.	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.
Template Sequence		T	A	Y	Y	R	G	A	M	G	I	I	L	V	Y	D	V	T	D	E	R	T	F	T	N	I	K	Q	W	F	K	T	V	N	E	H	A	N	D	E	A	Q	L	L	L	V	G	N	K	S	D	M	E	T	R	V	V	T	A	D	Q	G	E	A	L	A	K	E	L	.	.	.	.	.	.	.	.	.	G	I	P
Template Known Secondary structure						T	T		S								T	T							T												T	T	T		S									T	T		S	S			S													.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.										.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	E	S	S	A	K	N	D	D	N	V	N	E	I	F	F	T	L	A	K	L	I	Q	E	K	I	D	S	N	K	L	V	G	V	G	N
Template Known Secondary structure						B	T	T	T	T	B	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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