Job Description P0CE47 Confidence 97.94% Date Thu Jan 5 11:30:14 GMT 2012 Rank 313 Aligned Residues 135 % Identity 17% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																					.	.	.																						.	.	.	.	.
Query SS confidence																																																					.	.	.																						.	.	.	.	.
Query Sequence		S	K	E	K	F	E	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	.	.	.	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	.	.	.	.	.
Query Conservation																																																					.	.	.																						.	.	.	.	.
Alig confidence																																																					.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I
Template Known Secondary structure											S	S								S	T	T	S	S															T	T											S	S	S														T										S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
														74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	T	R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	.	.	.	.	.	.	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.															.																				.	.
Template Conservation																																																											.																				.	.
Template Sequence		I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	.	A	C	E	A	Q	A	K	A	F	K	D	K	V	D	V	A	S	V	I	.	.	V
Template Known Secondary structure													T	T													T	T																		S								T	T			T	.	T																			.	.
Template Predicted Secondary structure																																																											.																				.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.
		136	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	C	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	L	D
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions