Job Description P0CE47 Confidence 100.00% Date Thu Jan 5 11:30:14 GMT 2012 Rank 9 Aligned Residues 376 % Identity 32% Template c1skqB_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	.	.	.	.	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V	D	C	P	G	H
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.
Template Conservation
Template Sequence		K	P	H	L	N	L	I	V	I	G	H	V	D	H	G	K	S	T	L	V	G	R	L	L	M	D	R	G	F	I	D	E	K	T	V	K	E	A	E	E	A	A	K	K	L	G	K	E	S	E	K	F	A	F	L	L	D	R	L	K	E	E	M	R	F	E	T	K	K	Y	F	F	T	I	I	D	A	P	G	H
Template Known Secondary structure												S	T	T	S	S													B				S	S												T	T		T	T												T							S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																															.	.	.
Query SS confidence																												.	.	.	.	.	.	.																															.	.	.
Query Sequence		A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	.	.	.	.	.	.	.	P	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	.	.	.	D	D	E	E	L	L	E	L	V	E	M	E	V	R
Query Conservation																												.	.	.	.	.	.	.																															.	.	.
Alig confidence																												.	.	.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		R	D	F	V	K	N	M	I	T	G	A	S	Q	A	D	A	A	I	L	V	V	S	A	K	K	G	E	Y	E	A	G	M	S	V	E	G	Q	T	R	E	H	I	I	L	A	K	T	M	G	L	D	Q	L	I	V	A	V	N	K	M	D	L	T	E	P	P	Y	D	E	K	R	Y	K	E	I	V	D	Q	V	S
Template Known Secondary structure		T	T								S	S	S			S									S	T	T						S	S	S	S													T	T											G	G	G	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	.	.	.	.	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	V	V	T	G	R
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.													.
Template Conservation																																																.
Template Sequence		K	F	M	R	S	Y	G	F	N	T	N	K	V	R	F	V	P	V	V	A	P	S	G	D	N	I	T	H	K	S	E	N	M	K	W	Y	N	G	P	T	L	E	E	Y	L	D	.	Q	L	E	L	P	P	K	P	V	D	K	P	L	R	I	P	I	Q	D	V	Y	S	I	S	G	V	G	T	V	P	V	G	R
Template Known Secondary structure							T	T				T	T							B	T	T	T	T	B	T	T	T	B			S	T	T	T	T			S									.	T							G	G	G	S			B										T	T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T	.	I	K	P	H	T	K	F	E	S	E	V	Y
Query Conservation																																																																					.
Alig confidence																				.	.																																																.
Template Conservation																				.	.
Template Sequence		V	E	S	G	V	L	K	V	G	D	K	I	V	F	M	P	A	G	.	.	K	V	G	E	V	R	S	I	E	T	H	H	T	K	M	D	K	A	E	P	G	D	N	I	G	F	N	V	R	G	V	E	K	K	D	I	K	R	G	D	V	V	G	H	P	N	N	P	P	T	V	A	D	E	F	T	A	R	I	I
Template Known Secondary structure				B	S				T	T							T	T	T	.	.											S	S				S				T	T									S			G	G	G			T	T					B	T	T	B
Template Predicted Secondary structure																				.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.														.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		I	L	S	K	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	I	H	P	I	A	M	D	D	G	L	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		V	V	W	H	P	.	.	.	.	.	T	A	L	A	N	G	Y	T	P	V	L	H	V	H	T	A	S	V	A	C	R	V	S	E	L	V	S	K	L	D	P	R	T	G	Q	E	A	E	K	N	P	Q	F	L	K	Q	G	D	V	A	I	V	K	F	K	P	I	K	P	L	C	V	E	K	Y	N	E	F	P	P
Template Known Secondary structure						S	.	.	.	.	.	S		B		T	T								T	T																T	T	T							S		S		B		T	T										S	S							T	T	T		G	G
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		332	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
				374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	F	A	I	R	E	G	G	R	T	V	G	A	G	V	V	A	K	V	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		L	G	R	F	A	M	R	D	M	G	K	T	V	G	V	G	I	I	V	D	V	K
Template Known Secondary structure		G	S							T	T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions