Job Description P0CE47 Confidence 100.00% Date Thu Jan 5 11:30:14 GMT 2012 Rank 16 Aligned Residues 355 % Identity 30% Template c1s0uA_ PDB info PDB header:translation Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit; PDBTitle: eif2gamma apo Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																		.	.																																.
Query SS confidence																																		.	.																																.
Query Sequence		T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	.	.	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	.	T	P	T	R	H	Y	A	H	V	D	C	P	G	H
Query Conservation																																		.	.																																.
Alig confidence																																		.	.																																.
Template Conservation
Template Sequence		S	Q	A	E	V	N	I	G	M	V	G	H	V	D	H	G	K	T	S	L	T	K	A	L	T	G	V	W	T	D	R	G	I	S	I	R	L	G	Y	A	D	C	E	I	R	K	C	P	Q	C	G	T	Y	T	T	K	P	R	C	P	N	C	L	A	E	T	E	F	L	R	R	V	S	F	V	D	S	P	G	H
Template Known Secondary structure												S		T	T	S	S										S																						T	T	T					S	S	S	B		T	T	S			B													S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	.	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P
Query Conservation																													.
Alig confidence																													.																																.
Template Conservation																																																													.
Template Sequence		E	T	L	M	A	T	M	L	S	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	Q	P	Q	T	K	E	H	L	M	A	L	E	I	L	G	I	D	K	I	I	I	V	Q	N	K	I	D	L	V	D	E	.	K	Q	A	E	E	N	Y	E	Q	I	K	E	F	V	K	G	T	I	A	E
Template Known Secondary structure										T	T		S			S								T	T	S		S	S														T	T											T	T	S	S		T	.	T	T	T	T	T										T	T	S	T	T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.
Query Sequence		G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	R	G	T	.	.	.	.	.	.	.	.	V	V	T	G	R	V	E	R	G	I
Query Conservation																																																																.	.	.	.	.	.	.	.
Alig confidence		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	N	A	P	I	I	P	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	V	L	L	K	A	I	Q	D	F	I	P	T	P	K	R	D	P	D	A	T	P	R	M	Y	V	A	R	S	F	D	I	N	K	P	G	T	E	I	K	D	L	K	G	G	V	L	G	G	A	I	I	Q	G	V
Template Known Secondary structure		.	.	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.												S							T	T	S															S	S			G	G	G													S
Template Predicted Secondary structure		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				200	.	.	.	.	.	.	.															.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		237	.	.	240	.	.	.	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																		.	.	.																						.
Query SS confidence													.	.	.	.	.	.	.	.	.	.																																		.	.	.																						.
Query Sequence		I	K	V	G	E	E	V	E	I	V	G	.	.	.	.	.	.	.	.	.	.	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	.	.	.	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	G	T	I	K	P	.	H
Query Conservation													.	.	.	.	.	.	.	.	.	.																																		.	.	.																						.
Alig confidence													.	.	.	.	.	.	.	.	.	.																																		.	.	.																						.
Template Conservation
Template Sequence		F	K	V	G	D	E	I	E	I	R	P	G	I	K	V	T	E	G	N	K	T	F	W	K	P	L	T	T	K	I	V	S	L	A	A	G	N	T	I	L	R	K	A	H	P	G	G	L	I	G	V	G	T	T	L	D	P	Y	L	T	K	S	D	A	L	T	G	S	V	V	G	L	P	G	T	L	P	P	I	R
Template Known Secondary structure				T	T														T	T																	T	T				S				S	S	S							S	S		G	G	G	T	G	G	G	T	T	T	T					S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		T	K	F	E	S	E	V	Y	I	L	S	K	.	.	.	.	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	I	H	P	I	A	M	D	D	G	L	R	F	A	I	R
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.
Template Sequence		E	K	I	T	I	R	A	N	L	L	D	R	V	V	G	T	K	E	E	L	K	I	E	P	L	R	T	G	E	V	L	M	L	N	I	G	T	A	T	T	A	G	V	.	.	.	.	.	.	.	.	.	I	T	S	A	R	G	D	I	A	D	I	K	L	K	L	P	I	C	A	E	I	G	D	R	V	A	I	S
Template Known Secondary structure															S	S		S	S	T	T							T	T								T	T							.	.	.	.	.	.	.	.	.						T	T														T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.										.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		379	380					.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		E	G	.	.	.	.	G	R	T	V	G	A	G	V	V
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.
Template Conservation
Template Sequence		R	R	V	G	S	R	W	R	L	I	G	Y	G	T	I
Template Known Secondary structure					S	S	S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions