Job Description P0CE47 Confidence 100.00% Date Thu Jan 5 11:30:14 GMT 2012 Rank 13 Aligned Residues 358 % Identity 26% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		1	.	.	.	.	.	.							.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		M	S	K	E	K	F	E	.	.	.	.	.	.	R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	N	E	V	D	Q	E	L	L	K	D	M	Y	G	K	E	H	V	N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	M	V	D	K	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H
Template Known Secondary structure		S	G	G	G		S	S	S				S	S	S													T	T	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S																				S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.															.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.																												.	.	.
Query SS confidence																																										.	.	.	.	.	.	.																												.	.	.
Query Sequence		R	H	Y	A	H	V	D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	.	.	.	.	.	.	.	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	.	.	.	D	D	E
Query Conservation																																										.	.	.	.	.	.	.																												.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.																												.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	F	S	L	L	D	A	P	G	A	S	Q	.	.	.	.	.	.	.	.	.	.	.	A	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E
Template Known Secondary structure												T	T	S	.	.	.	.	.	.	.	.	.	.	.		S									S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.												.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																								.	.																		.	.	.	.	.	.
Query SS confidence																								.	.																		.	.	.	.	.	.
Query Sequence		E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	.	.	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	.	.	.	.	.	.	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E
Query Conservation																								.	.																		.	.	.	.	.	.
Alig confidence																								.	.																		.	.	.	.	.	.															.
Template Conservation																																																															.
Template Sequence		E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R	R	V	A	G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y	L	D	.	S	M	T	H	L	E	R	K	V	N	A	P	F	I	M	P	I	A
Template Known Secondary structure																							T	T	T	T							B	T	T	T	T	B	T	T	S	S				T	T	T		T	T			S									.										T	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		D	V	F	S	I	S	G	R	G	T	V	V	T	G	R	V	E	R	G	I	I	K	V	G	E	E	V	E	I	V	G	I	K	E	T	Q	K	S	T	C	T	G	V	E	M	.	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K
Query Conservation																																															.
Alig confidence						.	.																												.	.											.
Template Conservation						.	.																												.	.
Template Sequence		S	K	Y	K	.	.	D	L	G	T	I	L	E	G	K	I	E	A	G	S	I	K	K	N	S	N	V	L	V	M	P	I	N	.	.	Q	T	L	E	V	T	A	I	Y	D	E	A	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L	R	V	R	G	D	D	S	D	V	Q	T	G	Y	V	L	T	S	T
Template Known Secondary structure						.	.	S	S	S									B	S				S	S							T	T	T	.	.											T	T					S				T	T									S			S	S			T	T						S
Template Predicted Secondary structure						.	.																												.	.
Template SS confidence
		475	.	.	.			.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.			.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.													.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	T	I	K	P	H	T	K	F	E	S	E	V	Y	I	L	S	K	D	E	G	G	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		K	N	P	V	H	A	T	T	R	F	I	A	Q	I	A	I	L	E	L	P	.	.	.	.	.	S	I	L	T	T	G	Y	S	C	V	M	H	I	H	T	A	V	E	E	V	S	F	A	K	L	L	H	K	L	D	K	T	N	R	K	S	K	K	P	P	M	F	A	T	K	G	M	K	I	I	A	E	L	E	T
Template Known Secondary structure		S	S															S	S			.	.	.	.	.			B	S	S								S	S	S																S	S					S	S			S	B			T	T
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570						.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.							.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		I	H	P	I	A	M	D	D	G	L	.	.	.	.	.	.	R	F	A	I	R	E	G	G	R	T	V	G	A	G	V	V	A	K	V	L
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	P	V	C	M	E	R	F	E	D	Y	Q	Y	M	G	R	F	T	L	R	D	Q	G	T	T	V	A	V	G	K	V	V	K	I	L
Template Known Secondary structure										T	T	T		G	G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.