Job Description P0CE47 Confidence 100.00% Date Thu Jan 5 11:30:14 GMT 2012 Rank 15 Aligned Residues 363 % Identity 28% Template c1kk3A_ PDB info PDB header:translation Chain: A: PDB Molecule:eif2gamma; PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+ Resolution 1.90 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence		T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	L	A	K	T	Y	G	G	A	.	.	.	.	.	.	.	.	A	R	A	F	D	Q	I	D	N	A	P	E	E	K	A	R	G	I	T	I	N	T	S	H	V	E	Y	D	T	P	T	R	H	Y	A	H	V
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	A	E	V	N	I	G	M	V	G	H	V	D	H	G	K	T	T	L	T	K	A	L	T	G	V	W	T	D	S	E	E	L	R	R	G	I	T	I	K	I	G	F	A	D	A	E	I	R	R	C	P	N	C	G	R	Y	S	T	S	P	V	C	P	Y	C	G	H	E	T	E	F	V	R	R	V	S	F	I
Template Known Secondary structure			S									S	S	T	T	S	S										T							T	T	S	S		S	S	S													T	T	T					S	S	S	B		T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		D	C	P	G	H	A	D	Y	V	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	.	M	P	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S
Query Conservation																																		.
Alig confidence																																		.																																.
Template Conservation																																																																		.
Template Sequence		D	A	P	G	H	E	A	L	M	T	T	M	L	A	G	A	S	L	M	D	G	A	I	L	V	I	A	A	N	E	P	C	P	R	P	Q	T	R	E	H	L	M	A	L	Q	I	I	G	Q	K	N	I	I	I	A	Q	N	K	I	E	L	V	D	K	.	E	K	A	L	E	N	Y	R	Q	I	K	E	F	I	E
Template Known Secondary structure				S	S												G	G	G		S								T	T	S		S																T											G	G	G	S			.															T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.						.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.
Query Sequence		Q	Y	D	F	P	G	D	D	T	P	I	V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D	V	F	S	I	S	G	.	.	.	.	.	R	G	T	V	V	T	G	R	V	E	R
Query Conservation																																																																		.	.	.	.	.
Alig confidence						.	.																.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation						.	.																.	.	.	.	.	.	.	.
Template Sequence		G	T	V	A	.	.	E	N	A	P	I	I	P	I	S	A	L	H	G	A	N	.	.	.	.	.	.	.	.	I	D	V	L	V	K	A	I	E	D	F	I	P	T	P	K	R	D	P	N	K	P	P	K	M	L	V	L	R	S	F	D	V	N	K	P	G	E	K	L	V	G	G	V	L	G	G	S	I	V	Q
Template Known Secondary structure		T	S	T	T	.	.	T	T							B	T	T	T	T	B	T	.	.	.	.	.	.	.	.												S							T	T	S													S
Template Predicted Secondary structure						.	.																.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																																	.	.	.																	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																																	.	.	.																	.
Query Sequence		G	I	I	K	V	G	E	E	V	E	I	V	G	I	.	.	.	.	.	.	.	.	.	.	K	E	T	Q	K	S	T	C	T	G	V	E	M	F	R	K	L	L	D	E	G	R	A	G	E	N	V	G	V	L	L	R	.	.	.	G	I	K	R	E	E	I	E	R	G	Q	V	L	A	K	P	.	G	T	I	K
Query Conservation																.	.	.	.	.	.	.	.	.	.																																	.	.	.																	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																	.	.	.																	.
Template Conservation
Template Sequence		G	K	L	K	V	G	D	E	I	E	I	R	P	G	V	P	Y	E	E	H	G	R	I	K	Y	E	P	I	T	T	E	I	V	S	L	Q	A	G	G	Q	F	V	E	E	A	Y	P	G	G	L	V	G	V	G	T	K	L	D	P	Y	L	T	K	G	D	L	M	A	G	N	V	V	G	K	P	G	K	L	P	P
Template Known Secondary structure		S				T	T														T	T																	T	T				S				S	S	S							S	S		G	G	G	T	G	G	G	T	T	T	T						T	T		S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		P	H	T	K	F	E	S	E	V	Y	I	L	S	K	D	E	G	G	.	.	R	H	T	P	F	F	K	G	Y	R	P	Q	F	Y	F	R	T	T	D	V	T	G	T	I	E	L	P	E	G	V	E	M	V	M	P	G	D	N	I	K	M	V	V	T	L	I	H	P	I	A	M	D	D	G	L	R	F	A	I	R
Query Conservation																				.	.
Alig confidence																				.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.
Template Sequence		V	W	D	S	L	R	L	E	V	H	L	L	E	R	V	V	E	Q	E	L	K	V	E	P	I	K	R	K	E	V	L	L	L	N	V	G	T	A	R	T	M	G	L	V	T	G	L	.	.	.	.	.	.	.	.	.	G	K	D	E	I	E	V	K	L	Q	I	P	V	C	A	E	P	G	D	R	V	A	I	S
Template Known Secondary structure																						S						T	T								T	T											.	.	.	.	.	.	.	.	.		T	T														T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.										.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		379	380	.					.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		E	G	G	.	.	.	.	R	T	V	G	A	G	V	V	A	K
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		R	Q	I	G	S	R	W	R	L	I	G	Y	G	I	I	K	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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