Secondary structure and disorder prediction

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Sequence		M	S	T	I	E	E	R	V	K	K	I	I	G	E	Q	L	G	V	K	Q	E	E	V	T	N	N	A	S	F	V	E	D	L	G	A	D	S	L	D	T	V	E	L	V	M	A	L	E	E	E	F	D	T	E	I	P	D	E	E	A
Secondary structure
SS confidence
Disorder		?																	?	?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Sequence		E	K	I	T	T	V	Q	A	A	I	D	Y	I	N	G	H	Q	A
Secondary structure
SS confidence
Disorder																?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1t8k chain A Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.7% Identity: 100% Fold: Acyl carrier protein-like Superfamily: ACP-like Family: Acyl-carrier protein (ACP) Phyre2 PDB 2qnw chain A Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.7% Identity: 51% PDB header:signaling protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein Phyre2 PDB 2cnr chain A Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.7% Identity: 42% PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: structural studies on the interaction of scfas acp with2 acps Phyre2 PDB 2fq2 chain A Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 99.7% Identity: 51% PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum Phyre2 PDB 2l3v chain A Region: 1 - 78 Aligned: 78 Modelled: 78 Confidence: 99.7% Identity: 62% PDB header:lipid binding protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: nmr structure of acyl carrier protein from brucella melitensis Phyre2 PDB 3ejb chain C Region: 1 - 73 Aligned: 73 Modelled: 73 Confidence: 99.7% Identity: 100% PDB header:oxidoreductase/lipid transport Chain: C: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of p450bioi in complex with tetradecanoic2 acid ligated acyl carrier protein Phyre2 PDB 1klp chain A Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.6% Identity: 34% Fold: Acyl carrier protein-like Superfamily: ACP-like Family: Acyl-carrier protein (ACP) Phyre2 PDB 2dnw chain A Region: 2 - 77 Aligned: 76 Modelled: 76 Confidence: 99.6% Identity: 41% PDB header:transport protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna Phyre2 PDB 2kwl chain A Region: 2 - 77 Aligned: 76 Modelled: 76 Confidence: 99.6% Identity: 45% PDB header:lipid binding protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of acyl carrier protein from borrelia burgdorferi Phyre2 PDB 2eht chain A Region: 4 - 78 Aligned: 75 Modelled: 75 Confidence: 99.6% Identity: 64% PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2) Phyre2 PDB 1x3o chain A Region: 2 - 76 Aligned: 75 Modelled: 75 Confidence: 99.6% Identity: 59% PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of the acyl carrier protein from thermus2 thermophilus hb8 Phyre2 PDB 2fvf chain A Region: 2 - 76 Aligned: 75 Modelled: 75 Confidence: 99.6% Identity: 41% PDB header:biosynthetic protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: structure of 10:0-acp (protein with docked fatty acid) Phyre2 PDB 2liu chain A Region: 2 - 76 Aligned: 74 Modelled: 75 Confidence: 99.6% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:cura; PDBTitle: nmr structure of holo-acpi domain from cura module from lyngbya2 majuscula Phyre2 PDB 2l4b chain A Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.6% Identity: 32% PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a Phyre2 PDB 1vku chain A Region: 2 - 76 Aligned: 74 Modelled: 75 Confidence: 99.6% Identity: 34% Fold: Acyl carrier protein-like Superfamily: ACP-like Family: Acyl-carrier protein (ACP) Phyre2 PDB 2kci chain A Region: 3 - 78 Aligned: 76 Modelled: 76 Confidence: 99.6% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acyl carrier protein; PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141 Phyre2 PDB 1f80 chain D Region: 2 - 74 Aligned: 72 Modelled: 73 Confidence: 99.5% Identity: 54% Fold: Acyl carrier protein-like Superfamily: ACP-like Family: Acyl-carrier protein (ACP) Phyre2 PDB 2l9f chain A Region: 2 - 77 Aligned: 76 Modelled: 76 Confidence: 99.5% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp Phyre2 PDB 2afd chain A Region: 2 - 77 Aligned: 75 Modelled: 76 Confidence: 99.5% Identity: 16% PDB header:ligand binding protein Chain: A: PDB Molecule:protein asl1650; PDBTitle: solution structure of asl1650, an acyl carrier protein from anabaena2 sp. pcc 7120 with a variant phosphopantetheinylation-site sequence Phyre2 PDB 2kr5 chain A Region: 2 - 77 Aligned: 75 Modelled: 76 Confidence: 99.5% Identity: 25% PDB header:transport protein Chain: A: PDB Molecule:aflatoxin biosynthesis polyketide synthase; PDBTitle: solution structure of an acyl carrier protein domain from fungal type2 i polyketide synthase Phyre2 1 d1t8ka_ 2 c2qnwA_ 3 c2cnrA_ 4 c2fq2A_ 5 c2l3vA_ 6 c3ejbC_ 7 d1klpa_ 8 c2dnwA_ 9 c2kwlA_ 10 c2ehtA_ 11 c1x3oA_ 12 c2fvfA_ 13 c2liuA_ 14 c2l4bA_ 15 d1vkua_ 16 c2kciA_ 17 d1f80d_ 18 c2l9fA_ 19 c2afdA_ 20 c2kr5A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t8ka_ 99.7 100 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 2 c2qnwA_ 99.7 51 PDB header:signaling protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein 3 c2cnrA_ 99.7 42 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: structural studies on the interaction of scfas acp with2 acps 4 c2fq2A_ 99.7 51 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum 5 c2l3vA_ 99.7 62 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: nmr structure of acyl carrier protein from brucella melitensis 6 c3ejbC_ 99.7 100 PDB header:oxidoreductase/lipid transport Chain: C: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of p450bioi in complex with tetradecanoic2 acid ligated acyl carrier protein 7 d1klpa_ 99.6 34 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 8 c2dnwA_ 99.6 41 PDB header:transport protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna 9 c2kwlA_ 99.6 45 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of acyl carrier protein from borrelia burgdorferi 10 c2ehtA_ 99.6 64 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2) 11 c1x3oA_ 99.6 59 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of the acyl carrier protein from thermus2 thermophilus hb8 12 c2fvfA_ 99.6 41 PDB header:biosynthetic protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: structure of 10:0-acp (protein with docked fatty acid) 13 c2liuA_ 99.6 24 PDB header:transferase Chain: A: PDB Molecule:cura; PDBTitle: nmr structure of holo-acpi domain from cura module from lyngbya2 majuscula 14 c2l4bA_ 99.6 32 PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a 15 d1vkua_ 99.6 34 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 16 c2kciA_ 99.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acyl carrier protein; PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141 17 d1f80d_ 99.5 54 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 18 c2l9fA_ 99.5 16 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 19 c2afdA_ 99.5 16 PDB header:ligand binding protein Chain: A: PDB Molecule:protein asl1650; PDBTitle: solution structure of asl1650, an acyl carrier protein from anabaena2 sp. pcc 7120 with a variant phosphopantetheinylation-site sequence 20 c2kr5A_ 99.5 25 PDB header:transport protein Chain: A: PDB Molecule:aflatoxin biosynthesis polyketide synthase; PDBTitle: solution structure of an acyl carrier protein domain from fungal type2 i polyketide synthase 21 c2ju2A_ not modelled 99.5 22 PDB header:transferase Chain: A: PDB Molecule:erythronolide synthase; PDBTitle: minimized mean solution structure of the acyl carrier2 protein domain from module 2 of 6-deoxyerythronolide b3 synthase (debs) 22 d2af8a_ not modelled 99.5 28 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 23 c3ce7A_ not modelled 99.5 31 PDB header:biosynthetic protein Chain: A: PDB Molecule:specific mitochodrial acyl carrier protein; PDBTitle: crystal structure of toxoplasma specific mitochodrial acyl2 carrier protein, 59.m03510 24 d1dv5a_ not modelled 99.5 22 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:apo-D-alanyl carrier protein 25 c2cgqA_ not modelled 99.5 31 PDB header:protein transport Chain: A: PDB Molecule:acyl carrier protein acpa; PDBTitle: a putative acyl carrier protein(rv0033) from mycobacterium2 tuberculosis 26 d1nq4a_ not modelled 99.5 26 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 27 c3lmoA_ not modelled 99.4 26 PDB header:transferase Chain: A: PDB Molecule:specialized acyl carrier protein; PDBTitle: crystal structure of specialized acyl carrier protein2 (rpa2022) from rhodopseudomonas palustris, northeast3 structural genomics consortium target rpr324 28 c2jgpA_ not modelled 99.4 23 PDB header:ligase Chain: A: PDB Molecule:tyrocidine synthetase 3; PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine2 synthetase tycc 29 c2cq8A_ not modelled 99.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase; PDBTitle: solution structure of rsgi ruh-033, a pp-binding domain of2 10-fthfdh from human cdna 30 d1or5a_ not modelled 99.4 25 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 31 d2gdwa1 not modelled 99.4 21 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Peptidyl carrier domain 32 c2roqA_ not modelled 99.4 18 PDB header:transferase Chain: A: PDB Molecule:enterobactin synthetase component f; PDBTitle: solution structure of the thiolation-thioesterase di-domain2 of enterobactin synthetase component f 33 d2jq4a1 not modelled 99.3 21 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 34 c2jq4A_ not modelled 99.3 21 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein atu2571; PDBTitle: complete resonance assignments and solution structure2 calculation of atc2521 (nesg id: att6) from agrobacterium3 tumefaciens 35 c2fq1A_ not modelled 99.3 16 PDB header:hydrolase Chain: A: PDB Molecule:isochorismatase; PDBTitle: crystal structure of the two-domain non-ribosomal peptide synthetase2 entb containing isochorismate lyase and aryl-carrier protein domains 36 c2vsqA_ not modelled 99.2 20 PDB header:ligase Chain: A: PDB Molecule:surfactin synthetase subunit 3; PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module 37 d2pnga1 not modelled 99.1 31 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 38 c2amwA_ not modelled 97.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ne2163; PDBTitle: solution nmr structure of protein ne2163 from nitrosomonas europaea.2 northeast structural genomics consortium target net1. 39 c2lkiA_ not modelled 97.8 26 PDB header:lipid transport Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution nmr structure of holo acyl carrier protein ne2163 from2 nitrosomonas europaea. northeast structural genomics consortium3 target net1. 40 c3s8mA_ not modelled 90.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acp reductase; PDBTitle: the crystal structure of fabv 41 c2uv8C_ not modelled 85.9 10 PDB header:transferase Chain: C: PDB Molecule:fatty acid synthase subunit alpha (fas2); PDBTitle: crystal structure of yeast fatty acid synthase with stalled2 acyl carrier protein at 3.1 angstrom resolution 42 c2uv9B_ not modelled 59.9 13 PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase alpha subunits; PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the alpha subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400 43 c2vkzC_ not modelled 58.8 15 PDB header:transferase Chain: C: PDB Molecule:fatty acid synthase subunit alpha; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 44 d2gyc31 not modelled 24.8 47 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 45 c1rqtA_ not modelled 24.2 47 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 46 d1rqta_ not modelled 24.2 47 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 47 c1rqtB_ not modelled 24.2 47 PDB header:ribosome Chain: B: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 48 c3k13A_ not modelled 22.9 15 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 49 d1af7a1 not modelled 17.8 9 Fold:Chemotaxis receptor methyltransferase CheR, N-terminal domain Superfamily:Chemotaxis receptor methyltransferase CheR, N-terminal domain Family:Chemotaxis receptor methyltransferase CheR, N-terminal domain 50 c3a2kB_ not modelled 16.7 27 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 51 d2c5ra1 not modelled 16.6 23 Fold:Phage replication organizer domain Superfamily:Phage replication organizer domain Family:Phage replication organizer domain 52 d1wuil1 not modelled 14.3 17 Fold:HydB/Nqo4-like Superfamily:HydB/Nqo4-like Family:Nickel-iron hydrogenase, large subunit 53 d1dd4d_ not modelled 14.2 29 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 54 d1jrma_ not modelled 14.1 22 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 55 d2dt5a1 not modelled 13.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional repressor Rex, N-terminal domain 56 d1dd3a1 not modelled 12.5 30 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 57 c1u9hB_ not modelled 12.5 17 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of e(22)l(23) 58 d1iv3a_ not modelled 11.5 9 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 59 d1q1va_ not modelled 11.2 13 Fold:Another 3-helical bundle Superfamily:DEK C-terminal domain Family:DEK C-terminal domain 60 d1h99a1 not modelled 10.9 19 Fold:PTS-regulatory domain, PRD Superfamily:PTS-regulatory domain, PRD Family:PTS-regulatory domain, PRD 61 c1unyA_ not modelled 10.5 24 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 62 c3pvpA_ not modelled 10.4 17 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 63 d1j1va_ not modelled 10.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 64 d1ql3a_ not modelled 9.8 33 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 65 c3m20A_ not modelled 8.2 19 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 66 d1nera_ not modelled 8.2 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 67 c2fwtA_ not modelled 8.0 21 PDB header:electron transport Chain: A: PDB Molecule:dhc, diheme cytochrome c; PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides 68 c3ketA_ not modelled 7.9 24 PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator 69 c3mb2G_ not modelled 7.9 14 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 70 d1y7ea1 not modelled 7.8 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 71 c3t5sA_ not modelled 7.7 23 PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia 72 d1bjpa_ not modelled 7.6 23 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 73 d2rk5a1 not modelled 7.4 17 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 74 c2kp6A_ not modelled 7.1 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 75 d2bw3a1 not modelled 7.1 14 Fold:Hermes dimerisation domain Superfamily:Hermes dimerisation domain Family:Hermes dimerisation domain 76 c1dd3C_ not modelled 6.9 38 PDB header:ribosome Chain: C: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima 77 c1dd3D_ not modelled 6.9 38 PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima 78 c3ry0A_ not modelled 6.8 29 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 79 c2kxoA_ not modelled 6.8 8 PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae 80 d2gdga1 not modelled 6.7 9 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 81 d1dd4c_ not modelled 6.7 38 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 82 d1otfa_ not modelled 6.7 23 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 83 d1gd0a_ not modelled 6.6 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 84 c2op8A_ not modelled 6.6 23 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 85 c3hrdF_ not modelled 6.5 24 PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 86 d1fima_ not modelled 6.4 9 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 87 d1yh5a1 not modelled 6.4 26 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 88 c2ormA_ not modelled 6.3 14 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 89 d2r2za1 not modelled 6.2 17 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 90 c3abfB_ not modelled 6.2 29 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 91 d1c75a_ not modelled 6.0 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 92 c1zunA_ not modelled 5.9 14 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 93 d1u0ma2 not modelled 5.9 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 94 c2xczA_ not modelled 5.9 23 PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus 95 d1wjua_ not modelled 5.9 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 96 c1u9hA_ not modelled 5.9 17 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of e(22)l(23) 97 d1hfoa_ not modelled 5.7 9 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 98 d1w55a2 not modelled 5.7 8 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 99 d1dpta_ not modelled 5.7 9 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0