Return to main results Retrieve Phyre Job Id

Job DescriptionP37679
Confidence83.07%DateThu Jan 5 11:56:53 GMT 2012
Rank146Aligned Residues129
% Identity12%Templated1knwa2
SCOP infoTIM beta/alpha-barrel PLP-binding barrel Alanine racemase-like, N-terminal domain
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40... ......50.........60.........70.........80......
Predicted Secondary structure 









...........























Query SS confidence 

























. . . . . . . . . . .










































Query Sequence  SWPERLVLAKSCGFDFVEMSVDETDE. . . . . . . . . . . RLSRLDWSAAQRTSLVAAMIETGVGIPSMCLSAHRRFPFGSRD
Query Conservation          
   

  


       ...........                      

 
                
Alig confidence 

























...........





































.....
Template Conservation 
  

  
   
    
 


                  



                 
 
 




 

   .....
Template Sequence  SVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVD. . . . .
Template Known Secondary structure  SSTT

S

SS
TTS

SSSTT


SGGGTT





TT
.....
Template Predicted Secondary structure 






































.....
Template SS confidence 















































































   123......130.........140.........150.........160.........170.........180.........190.......
 
   87..90.........100.........110.........120. ........130.........140...... ...150....
Predicted Secondary structure 









....




...
Query SS confidence 


































. . . .
























. . .







Query Sequence  EAVRERAREIMSKAIRLARDLGIRTIQLAGYDVYY. . . . EDHDEGTRQRFAEGLAWAVEQAAAS. . . QVMLAVEI
Query Conservation     
          
  
  

   
    
    ....              
      
   ...

 
 

 
Alig confidence  ...































....
























...







Template Conservation  ...                  
     





    
               
                
  

Template Sequence  . . . YAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEP
Template Known Secondary structure  ...T


S








STT




TS



Template Predicted Secondary structure  ...



























Template SS confidence 










































































   198.200.........210.........220.........230.........240.........250.........260.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions