Phyre 2 alignment of P37679 with d1edga

Job Description P37679
Confidence 79.50% Date Thu Jan 5 11:56:53 GMT 2012

Rank 170 Aligned Residues 239

% Identity 13% Template d1edga_

SCOP info TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases

Resolution 1.60

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence	Y	E	K	A	L	A	K	D	L	S	W	P	E	R	L	V	L	A	K	S	C	G	F	D	F	V	E	M	S	V	.	D	E	T	D	E	R	L	S	R	L	D	W	S	A	A	Q	R	T	S	L	V	A	A	M	I	E	T	G	V	G	I	P	S	M	C	L	S	A	H	R	R	F	P	F	G	S	R	D	E
Query Conservation																															.
Alig confidence																															.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	E	T	S	W	S	G	I	K	T	T	K	Q	M	I	D	A	I	K	Q	K	G	F	N	T	V	R	I	P	V	S	W	H	P	H	V	S	G	S	D	Y	K	I	S	D	V	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T		S														T											G	G	G			T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence	A	V	R	E	R	A	R	E	I	M	S	K	A	I	R	L	A	R	D	L	G	I	R	T	I	Q	L	A	G	.	.	.	.	.	.	.	Y	D	V	Y	Y	E	D	H	D	E	G	T	R	Q	R	F	A	E	G	L	A	W	A	V	E	Q	A	A	A	S	Q	V	M	L	A	V	E	I	M	D	T	A	F	M
Query Conservation																														.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	M	N	R	V	Q	E	V	V	N	Y	C	I	D	N	K	M	Y	V	I	L	N	T	H	H	D	V	D	K	V	K	G	Y	F	P	S	S	Q	Y	M	A	S	S	K	K	Y	I	T	S	V	W	A	Q	I	A	A	R	F	A	N	Y	D	E	H	L	I	F	E	G	M	N	E	P	R	L
Template Known Secondary structure	.	.	.	.	.	.													T	T	T									S		B		T	T	T	S	B		S	S	G	G	G																			T	T	T			T	T							S	S
Template Predicted Secondary structure	.	.	.	.	.	.
Template SS confidence
							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

	161	.																									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.									.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query Sequence	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	K	W	K	K	W	D	E	M	L	A	S	P	W	F	T	V	Y	P	D	V	G	N	L	S	A	W	G	N	D	V	P	A	E	L	K	L	G	.	.	.	.	.	.	.	.	I	D	R	I	A	A	I
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	G	H	A	N	E	W	W	P	E	L	T	N	S	D	V	V	D	S	I	N	C	I	N	Q	L	N	Q	D	F	V	N	T	V	R	A	T	G	G	K	N	A	S	R	Y	L	M	C	P	G	Y	V	A	S	P	D	G	A	T	N	D	Y	F	R	M	P	N	D	I	S	G	N	N	N	K	I	I	V	S	V
Template Known Secondary structure	T	T	S	T	T	T	T	S			T	T																									T		G	G	G	G	T	S							G	G	G							S	T	T								T	T			S
Template Predicted Secondary structure
Template SS confidence
	174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

	209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																												.	.	.	.											.	.
Query SS confidence																												.	.	.	.											.	.
Query Sequence	H	L	K	D	T	Q	P	V	T	G	Q	S	P	G	Q	F	R	D	V	P	F	G	E	G	C	V	D	.	.	.	.	F	V	G	I	F	K	T	L	H	K	.	.	L	N	Y	R	G	S	F	L	I	E	M	W	T	E	K	A	K	E	P	V	L	E	I	I	Q	A	R	R	W	I	E	A	R	M	Q	E	A
Query Conservation																												.	.	.	.											.	.
Alig confidence																												.	.	.	.											.	.
Template Conservation
Template Sequence	H	A	Y	C	P	W	N	F	A	G	L	A	M	A	D	G	G	T	N	A	W	N	I	N	D	S	K	D	Q	S	E	V	T	W	F	M	D	N	I	Y	N	K	Y	T	S	R	G	I	P	V	I	I	G	E	C	G	A	V	D	K	N	N	L	K	T	R	V	E	Y	M	S	Y	Y	V	A	Q	A	K	A	R
Template Known Secondary structure					S					T	S		G	G	G	T							T	T																			T	G	G	G	T													S	S																			T
Template Predicted Secondary structure
Template SS confidence
	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

	283	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	F	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	I	L	C
Template Known Secondary structure	T
Template Predicted Secondary structure
Template SS confidence
	334	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions